Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1305 and EX28DRAFT_1306 are separated by 88 nucleotides EX28DRAFT_1306 and EX28DRAFT_1307 are separated by 271 nucleotides EX28DRAFT_1307 and EX28DRAFT_1308 overlap by 4 nucleotides EX28DRAFT_1308 and EX28DRAFT_1309 overlap by 4 nucleotides EX28DRAFT_1309 and EX28DRAFT_1310 are separated by 1 nucleotides
EX28DRAFT_1305: EX28DRAFT_1305 - hypothetical protein, at 1,311,955 to 1,312,755
_1305
EX28DRAFT_1306: EX28DRAFT_1306 - hypothetical protein, at 1,312,844 to 1,313,353
_1306
EX28DRAFT_1307: EX28DRAFT_1307 - hypothetical protein, at 1,313,625 to 1,313,978
_1307
EX28DRAFT_1308: EX28DRAFT_1308 - hypothetical protein, at 1,313,975 to 1,314,172
_1308
EX28DRAFT_1309: EX28DRAFT_1309 - hypothetical protein, at 1,314,169 to 1,314,744
_1309
EX28DRAFT_1310: EX28DRAFT_1310 - phage replication protein P, at 1,314,746 to 1,315,435
_1310
Position (kb) 1313
1314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 1312.680 kb on - strand at 1312.731 kb on + strand at 1312.823 kb on - strand at 1312.831 kb on - strand at 1312.831 kb on - strand at 1312.850 kb on - strand at 1312.889 kb on + strand at 1312.889 kb on + strand at 1312.890 kb on - strand at 1312.894 kb on + strand at 1312.907 kb on - strand, within EX28DRAFT_1306 at 1312.935 kb on + strand, within EX28DRAFT_1306 at 1312.948 kb on + strand, within EX28DRAFT_1306 at 1312.948 kb on + strand, within EX28DRAFT_1306 at 1312.953 kb on + strand, within EX28DRAFT_1306 at 1312.953 kb on + strand, within EX28DRAFT_1306 at 1312.953 kb on + strand, within EX28DRAFT_1306 at 1312.953 kb on + strand, within EX28DRAFT_1306 at 1312.954 kb on - strand, within EX28DRAFT_1306 at 1312.963 kb on + strand, within EX28DRAFT_1306 at 1312.963 kb on + strand, within EX28DRAFT_1306 at 1312.963 kb on + strand, within EX28DRAFT_1306 at 1312.964 kb on - strand, within EX28DRAFT_1306 at 1313.089 kb on - strand, within EX28DRAFT_1306 at 1313.345 kb on - strand at 1313.410 kb on - strand at 1313.410 kb on - strand at 1313.437 kb on - strand at 1313.437 kb on - strand at 1313.470 kb on - strand at 1313.470 kb on - strand at 1313.492 kb on - strand at 1313.626 kb on + strand at 1313.627 kb on - strand at 1313.845 kb on - strand, within EX28DRAFT_1307 at 1313.883 kb on + strand, within EX28DRAFT_1307 at 1313.919 kb on + strand, within EX28DRAFT_1307 at 1313.952 kb on + strand at 1314.012 kb on - strand, within EX28DRAFT_1308 at 1314.113 kb on + strand, within EX28DRAFT_1308 at 1314.179 kb on - strand at 1314.179 kb on - strand at 1314.355 kb on + strand, within EX28DRAFT_1309 at 1314.437 kb on - strand, within EX28DRAFT_1309 at 1314.667 kb on + strand, within EX28DRAFT_1309 at 1314.713 kb on + strand at 1314.713 kb on + strand at 1314.714 kb on - strand at 1314.734 kb on - strand at 1314.932 kb on + strand, within EX28DRAFT_1310 at 1314.978 kb on + strand, within EX28DRAFT_1310
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,312,680 - +0.1 1,312,731 + -1.7 1,312,823 - -2.0 1,312,831 - -1.0 1,312,831 - +0.5 1,312,850 - +0.5 1,312,889 + -0.5 1,312,889 + -1.5 1,312,890 - +0.7 1,312,894 + +0.6 1,312,907 - EX28DRAFT_1306 0.12 +0.8 1,312,935 + EX28DRAFT_1306 0.18 +0.8 1,312,948 + EX28DRAFT_1306 0.20 -0.4 1,312,948 + EX28DRAFT_1306 0.20 -0.2 1,312,953 + EX28DRAFT_1306 0.21 +2.5 1,312,953 + EX28DRAFT_1306 0.21 -0.2 1,312,953 + EX28DRAFT_1306 0.21 +0.1 1,312,953 + EX28DRAFT_1306 0.21 +0.2 1,312,954 - EX28DRAFT_1306 0.22 -0.1 1,312,963 + EX28DRAFT_1306 0.23 +2.3 1,312,963 + EX28DRAFT_1306 0.23 -0.7 1,312,963 + EX28DRAFT_1306 0.23 +0.5 1,312,964 - EX28DRAFT_1306 0.24 +0.2 1,313,089 - EX28DRAFT_1306 0.48 -1.8 1,313,345 - -1.8 1,313,410 - -1.0 1,313,410 - -1.7 1,313,437 - +4.1 1,313,437 - +1.3 1,313,470 - +9.0 1,313,470 - +3.5 1,313,492 - +0.5 1,313,626 + -0.8 1,313,627 - +1.3 1,313,845 - EX28DRAFT_1307 0.62 -1.3 1,313,883 + EX28DRAFT_1307 0.73 -2.5 1,313,919 + EX28DRAFT_1307 0.83 -0.3 1,313,952 + -0.9 1,314,012 - EX28DRAFT_1308 0.19 +0.0 1,314,113 + EX28DRAFT_1308 0.70 -1.0 1,314,179 - -0.8 1,314,179 - -1.5 1,314,355 + EX28DRAFT_1309 0.32 -0.3 1,314,437 - EX28DRAFT_1309 0.47 +0.3 1,314,667 + EX28DRAFT_1309 0.86 +0.5 1,314,713 + -1.4 1,314,713 + -0.0 1,314,714 - -3.6 1,314,734 - +1.4 1,314,932 + EX28DRAFT_1310 0.27 -2.6 1,314,978 + EX28DRAFT_1310 0.34 -1.6
Or see this region's nucleotide sequence