Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1232

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1231 and EX28DRAFT_1232 overlap by 6 nucleotidesEX28DRAFT_1232 and EX28DRAFT_1233 are separated by 45 nucleotides EX28DRAFT_1231: EX28DRAFT_1231 - Bacterial transferase hexapeptide (six repeats), at 1,249,534 to 1,250,514 _1231 EX28DRAFT_1232: EX28DRAFT_1232 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,250,509 to 1,251,057 _1232 EX28DRAFT_1233: EX28DRAFT_1233 - Periplasmic glucans biosynthesis protein, at 1,251,103 to 1,252,758 _1233 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1249.509 kb on + strandat 1249.510 kb on - strandat 1249.529 kb on + strandat 1249.594 kb on - strandat 1249.807 kb on - strand, within EX28DRAFT_1231at 1249.997 kb on - strand, within EX28DRAFT_1231at 1250.129 kb on + strand, within EX28DRAFT_1231at 1250.129 kb on + strand, within EX28DRAFT_1231at 1250.129 kb on + strand, within EX28DRAFT_1231at 1250.130 kb on - strand, within EX28DRAFT_1231at 1250.133 kb on + strand, within EX28DRAFT_1231at 1250.133 kb on + strand, within EX28DRAFT_1231at 1250.134 kb on - strand, within EX28DRAFT_1231at 1250.164 kb on + strand, within EX28DRAFT_1231at 1250.165 kb on - strand, within EX28DRAFT_1231at 1250.512 kb on + strandat 1250.513 kb on - strandat 1250.513 kb on - strandat 1250.684 kb on + strand, within EX28DRAFT_1232at 1250.684 kb on + strand, within EX28DRAFT_1232at 1250.685 kb on - strand, within EX28DRAFT_1232at 1250.687 kb on + strand, within EX28DRAFT_1232at 1250.687 kb on + strand, within EX28DRAFT_1232at 1250.803 kb on + strand, within EX28DRAFT_1232at 1250.804 kb on - strand, within EX28DRAFT_1232at 1250.826 kb on + strand, within EX28DRAFT_1232at 1250.827 kb on - strand, within EX28DRAFT_1232at 1250.827 kb on - strand, within EX28DRAFT_1232at 1250.830 kb on + strand, within EX28DRAFT_1232at 1250.971 kb on - strand, within EX28DRAFT_1232at 1251.128 kb on + strandat 1251.129 kb on - strandat 1251.129 kb on - strandat 1251.133 kb on - strandat 1251.133 kb on - strandat 1251.291 kb on - strand, within EX28DRAFT_1233at 1251.330 kb on + strand, within EX28DRAFT_1233at 1251.521 kb on + strand, within EX28DRAFT_1233at 1251.530 kb on + strand, within EX28DRAFT_1233at 1251.531 kb on - strand, within EX28DRAFT_1233at 1251.534 kb on + strand, within EX28DRAFT_1233at 1251.535 kb on - strand, within EX28DRAFT_1233at 1251.535 kb on - strand, within EX28DRAFT_1233at 1251.690 kb on + strand, within EX28DRAFT_1233at 1251.690 kb on + strand, within EX28DRAFT_1233at 1251.692 kb on + strand, within EX28DRAFT_1233at 1251.713 kb on + strand, within EX28DRAFT_1233at 1251.765 kb on + strand, within EX28DRAFT_1233at 1251.771 kb on + strand, within EX28DRAFT_1233at 1251.772 kb on - strand, within EX28DRAFT_1233at 1251.773 kb on + strand, within EX28DRAFT_1233at 1251.774 kb on - strand, within EX28DRAFT_1233at 1251.774 kb on - strand, within EX28DRAFT_1233at 1251.921 kb on + strand, within EX28DRAFT_1233at 1251.969 kb on - strand, within EX28DRAFT_1233at 1252.026 kb on + strand, within EX28DRAFT_1233

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,249,509 + -0.2
1,249,510 - +0.0
1,249,529 + +0.9
1,249,594 - +0.4
1,249,807 - EX28DRAFT_1231 0.28 -1.6
1,249,997 - EX28DRAFT_1231 0.47 +3.9
1,250,129 + EX28DRAFT_1231 0.61 +2.2
1,250,129 + EX28DRAFT_1231 0.61 +0.0
1,250,129 + EX28DRAFT_1231 0.61 +0.2
1,250,130 - EX28DRAFT_1231 0.61 +0.6
1,250,133 + EX28DRAFT_1231 0.61 +1.3
1,250,133 + EX28DRAFT_1231 0.61 +1.7
1,250,134 - EX28DRAFT_1231 0.61 -2.9
1,250,164 + EX28DRAFT_1231 0.64 -0.6
1,250,165 - EX28DRAFT_1231 0.64 -0.1
1,250,512 + -1.2
1,250,513 - -0.4
1,250,513 - +1.5
1,250,684 + EX28DRAFT_1232 0.32 -1.2
1,250,684 + EX28DRAFT_1232 0.32 +1.4
1,250,685 - EX28DRAFT_1232 0.32 +1.1
1,250,687 + EX28DRAFT_1232 0.32 -1.2
1,250,687 + EX28DRAFT_1232 0.32 +0.3
1,250,803 + EX28DRAFT_1232 0.54 +1.4
1,250,804 - EX28DRAFT_1232 0.54 +0.0
1,250,826 + EX28DRAFT_1232 0.58 -0.1
1,250,827 - EX28DRAFT_1232 0.58 +0.2
1,250,827 - EX28DRAFT_1232 0.58 +1.2
1,250,830 + EX28DRAFT_1232 0.58 -2.1
1,250,971 - EX28DRAFT_1232 0.84 -3.5
1,251,128 + +0.7
1,251,129 - +2.5
1,251,129 - -0.3
1,251,133 - +0.1
1,251,133 - +0.8
1,251,291 - EX28DRAFT_1233 0.11 -1.6
1,251,330 + EX28DRAFT_1233 0.14 -0.1
1,251,521 + EX28DRAFT_1233 0.25 -0.5
1,251,530 + EX28DRAFT_1233 0.26 -0.5
1,251,531 - EX28DRAFT_1233 0.26 -0.6
1,251,534 + EX28DRAFT_1233 0.26 +4.9
1,251,535 - EX28DRAFT_1233 0.26 +0.1
1,251,535 - EX28DRAFT_1233 0.26 +0.6
1,251,690 + EX28DRAFT_1233 0.35 +0.3
1,251,690 + EX28DRAFT_1233 0.35 +0.5
1,251,692 + EX28DRAFT_1233 0.36 -1.3
1,251,713 + EX28DRAFT_1233 0.37 +0.4
1,251,765 + EX28DRAFT_1233 0.40 -3.0
1,251,771 + EX28DRAFT_1233 0.40 -0.3
1,251,772 - EX28DRAFT_1233 0.40 -1.4
1,251,773 + EX28DRAFT_1233 0.40 +0.4
1,251,774 - EX28DRAFT_1233 0.41 +0.1
1,251,774 - EX28DRAFT_1233 0.41 -0.4
1,251,921 + EX28DRAFT_1233 0.49 -0.6
1,251,969 - EX28DRAFT_1233 0.52 -1.1
1,252,026 + EX28DRAFT_1233 0.56 +0.4

Or see this region's nucleotide sequence