Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1229 and EX28DRAFT_1230 overlap by 4 nucleotides EX28DRAFT_1230 and EX28DRAFT_1231 are separated by 135 nucleotides EX28DRAFT_1231 and EX28DRAFT_1232 overlap by 6 nucleotides EX28DRAFT_1232 and EX28DRAFT_1233 are separated by 45 nucleotides
EX28DRAFT_1229: EX28DRAFT_1229 - peptidase T, at 1,247,579 to 1,248,808
_1229
EX28DRAFT_1230: EX28DRAFT_1230 - tellurite resistance protein TehB, at 1,248,805 to 1,249,398
_1230
EX28DRAFT_1231: EX28DRAFT_1231 - Bacterial transferase hexapeptide (six repeats), at 1,249,534 to 1,250,514
_1231
EX28DRAFT_1232: EX28DRAFT_1232 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,250,509 to 1,251,057
_1232
EX28DRAFT_1233: EX28DRAFT_1233 - Periplasmic glucans biosynthesis protein, at 1,251,103 to 1,252,758
_1233
Position (kb) 1249
1250
1251 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1248.538 kb on + strand, within EX28DRAFT_1229 at 1248.539 kb on - strand, within EX28DRAFT_1229 at 1248.542 kb on + strand, within EX28DRAFT_1229 at 1248.542 kb on + strand, within EX28DRAFT_1229 at 1248.543 kb on - strand, within EX28DRAFT_1229 at 1248.550 kb on + strand, within EX28DRAFT_1229 at 1248.924 kb on - strand, within EX28DRAFT_1230 at 1248.927 kb on - strand, within EX28DRAFT_1230 at 1249.115 kb on + strand, within EX28DRAFT_1230 at 1249.149 kb on + strand, within EX28DRAFT_1230 at 1249.163 kb on - strand, within EX28DRAFT_1230 at 1249.365 kb on - strand at 1249.379 kb on + strand at 1249.380 kb on - strand at 1249.420 kb on - strand at 1249.505 kb on + strand at 1249.509 kb on + strand at 1249.510 kb on - strand at 1249.529 kb on + strand at 1249.594 kb on - strand at 1249.807 kb on - strand, within EX28DRAFT_1231 at 1249.997 kb on - strand, within EX28DRAFT_1231 at 1250.129 kb on + strand, within EX28DRAFT_1231 at 1250.129 kb on + strand, within EX28DRAFT_1231 at 1250.129 kb on + strand, within EX28DRAFT_1231 at 1250.130 kb on - strand, within EX28DRAFT_1231 at 1250.133 kb on + strand, within EX28DRAFT_1231 at 1250.133 kb on + strand, within EX28DRAFT_1231 at 1250.134 kb on - strand, within EX28DRAFT_1231 at 1250.164 kb on + strand, within EX28DRAFT_1231 at 1250.165 kb on - strand, within EX28DRAFT_1231 at 1250.512 kb on + strand at 1250.513 kb on - strand at 1250.513 kb on - strand at 1250.684 kb on + strand, within EX28DRAFT_1232 at 1250.684 kb on + strand, within EX28DRAFT_1232 at 1250.685 kb on - strand, within EX28DRAFT_1232 at 1250.687 kb on + strand, within EX28DRAFT_1232 at 1250.687 kb on + strand, within EX28DRAFT_1232 at 1250.803 kb on + strand, within EX28DRAFT_1232 at 1250.804 kb on - strand, within EX28DRAFT_1232 at 1250.826 kb on + strand, within EX28DRAFT_1232 at 1250.827 kb on - strand, within EX28DRAFT_1232 at 1250.827 kb on - strand, within EX28DRAFT_1232 at 1250.830 kb on + strand, within EX28DRAFT_1232 at 1250.971 kb on - strand, within EX28DRAFT_1232 at 1251.128 kb on + strand at 1251.129 kb on - strand at 1251.129 kb on - strand at 1251.133 kb on - strand at 1251.133 kb on - strand at 1251.291 kb on - strand, within EX28DRAFT_1233 at 1251.330 kb on + strand, within EX28DRAFT_1233
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,248,538 + EX28DRAFT_1229 0.78 -0.6 1,248,539 - EX28DRAFT_1229 0.78 +0.1 1,248,542 + EX28DRAFT_1229 0.78 +0.3 1,248,542 + EX28DRAFT_1229 0.78 -2.3 1,248,543 - EX28DRAFT_1229 0.78 +0.9 1,248,550 + EX28DRAFT_1229 0.79 -0.1 1,248,924 - EX28DRAFT_1230 0.20 +1.0 1,248,927 - EX28DRAFT_1230 0.21 -4.0 1,249,115 + EX28DRAFT_1230 0.52 +0.1 1,249,149 + EX28DRAFT_1230 0.58 +1.5 1,249,163 - EX28DRAFT_1230 0.60 +1.5 1,249,365 - +0.1 1,249,379 + -0.6 1,249,380 - -0.4 1,249,420 - +0.2 1,249,505 + +0.1 1,249,509 + -0.2 1,249,510 - +0.0 1,249,529 + +0.9 1,249,594 - +0.4 1,249,807 - EX28DRAFT_1231 0.28 -1.6 1,249,997 - EX28DRAFT_1231 0.47 +3.9 1,250,129 + EX28DRAFT_1231 0.61 +2.2 1,250,129 + EX28DRAFT_1231 0.61 +0.0 1,250,129 + EX28DRAFT_1231 0.61 +0.2 1,250,130 - EX28DRAFT_1231 0.61 +0.6 1,250,133 + EX28DRAFT_1231 0.61 +1.3 1,250,133 + EX28DRAFT_1231 0.61 +1.7 1,250,134 - EX28DRAFT_1231 0.61 -2.9 1,250,164 + EX28DRAFT_1231 0.64 -0.6 1,250,165 - EX28DRAFT_1231 0.64 -0.1 1,250,512 + -1.2 1,250,513 - -0.4 1,250,513 - +1.5 1,250,684 + EX28DRAFT_1232 0.32 -1.2 1,250,684 + EX28DRAFT_1232 0.32 +1.4 1,250,685 - EX28DRAFT_1232 0.32 +1.1 1,250,687 + EX28DRAFT_1232 0.32 -1.2 1,250,687 + EX28DRAFT_1232 0.32 +0.3 1,250,803 + EX28DRAFT_1232 0.54 +1.4 1,250,804 - EX28DRAFT_1232 0.54 +0.0 1,250,826 + EX28DRAFT_1232 0.58 -0.1 1,250,827 - EX28DRAFT_1232 0.58 +0.2 1,250,827 - EX28DRAFT_1232 0.58 +1.2 1,250,830 + EX28DRAFT_1232 0.58 -2.1 1,250,971 - EX28DRAFT_1232 0.84 -3.5 1,251,128 + +0.7 1,251,129 - +2.5 1,251,129 - -0.3 1,251,133 - +0.1 1,251,133 - +0.8 1,251,291 - EX28DRAFT_1233 0.11 -1.6 1,251,330 + EX28DRAFT_1233 0.14 -0.1
Or see this region's nucleotide sequence