Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1127 and EX28DRAFT_1128 are separated by 165 nucleotides EX28DRAFT_1128 and EX28DRAFT_1129 are separated by 155 nucleotides EX28DRAFT_1129 and EX28DRAFT_1130 are separated by 5 nucleotides EX28DRAFT_1130 and EX28DRAFT_1131 are separated by 87 nucleotides
EX28DRAFT_1127: EX28DRAFT_1127 - hypothetical protein, at 1,143,015 to 1,143,806
_1127
EX28DRAFT_1128: EX28DRAFT_1128 - hypothetical protein, at 1,143,972 to 1,144,211
_1128
EX28DRAFT_1129: EX28DRAFT_1129 - hypothetical protein, at 1,144,367 to 1,144,786
_1129
EX28DRAFT_1130: EX28DRAFT_1130 - RNA polymerase sigma factor, sigma-70 family, at 1,144,792 to 1,145,352
_1130
EX28DRAFT_1131: EX28DRAFT_1131 - hypothetical protein, at 1,145,440 to 1,145,811
_1131
Position (kb) 1144
1145 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1143.368 kb on + strand, within EX28DRAFT_1127 at 1143.394 kb on - strand, within EX28DRAFT_1127 at 1143.421 kb on + strand, within EX28DRAFT_1127 at 1143.422 kb on - strand, within EX28DRAFT_1127 at 1143.932 kb on + strand at 1144.054 kb on + strand, within EX28DRAFT_1128 at 1144.112 kb on - strand, within EX28DRAFT_1128 at 1144.299 kb on + strand at 1144.299 kb on + strand at 1144.299 kb on + strand at 1144.320 kb on + strand at 1144.351 kb on - strand at 1144.360 kb on - strand at 1144.437 kb on + strand, within EX28DRAFT_1129 at 1144.673 kb on - strand, within EX28DRAFT_1129 at 1144.925 kb on - strand, within EX28DRAFT_1130 at 1145.055 kb on - strand, within EX28DRAFT_1130 at 1145.129 kb on - strand, within EX28DRAFT_1130 at 1145.232 kb on + strand, within EX28DRAFT_1130 at 1145.348 kb on + strand at 1145.721 kb on + strand, within EX28DRAFT_1131 at 1145.721 kb on + strand, within EX28DRAFT_1131 at 1145.780 kb on + strand at 1145.780 kb on + strand at 1145.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,143,368 + EX28DRAFT_1127 0.45 +0.2 1,143,394 - EX28DRAFT_1127 0.48 -3.7 1,143,421 + EX28DRAFT_1127 0.51 -0.3 1,143,422 - EX28DRAFT_1127 0.51 -0.0 1,143,932 + +1.8 1,144,054 + EX28DRAFT_1128 0.34 -0.4 1,144,112 - EX28DRAFT_1128 0.58 +1.6 1,144,299 + -3.1 1,144,299 + +0.2 1,144,299 + +0.6 1,144,320 + +1.6 1,144,351 - -0.0 1,144,360 - -0.2 1,144,437 + EX28DRAFT_1129 0.17 -1.2 1,144,673 - EX28DRAFT_1129 0.73 -1.7 1,144,925 - EX28DRAFT_1130 0.24 -0.5 1,145,055 - EX28DRAFT_1130 0.47 -0.8 1,145,129 - EX28DRAFT_1130 0.60 -0.6 1,145,232 + EX28DRAFT_1130 0.78 +1.3 1,145,348 + -0.3 1,145,721 + EX28DRAFT_1131 0.76 +0.4 1,145,721 + EX28DRAFT_1131 0.76 +0.2 1,145,780 + -1.6 1,145,780 + -1.3 1,145,781 - -0.4
Or see this region's nucleotide sequence