Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0987 and EX28DRAFT_0988 overlap by 11 nucleotides EX28DRAFT_0988 and EX28DRAFT_0989 are separated by 13 nucleotides
EX28DRAFT_0987: EX28DRAFT_0987 - Trehalose and maltose hydrolases (possible phosphorylases), at 988,033 to 990,312
_0987
EX28DRAFT_0988: EX28DRAFT_0988 - beta-phosphoglucomutase, at 990,302 to 990,967
_0988
EX28DRAFT_0989: EX28DRAFT_0989 - ABC-type sugar transport systems, ATPase components, at 990,981 to 992,063
_0989
Position (kb) 990
991 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 989.489 kb on - strand, within EX28DRAFT_0987 at 989.490 kb on + strand, within EX28DRAFT_0987 at 989.491 kb on - strand, within EX28DRAFT_0987 at 989.491 kb on - strand, within EX28DRAFT_0987 at 989.491 kb on - strand, within EX28DRAFT_0987 at 989.491 kb on - strand, within EX28DRAFT_0987 at 989.497 kb on + strand, within EX28DRAFT_0987 at 989.600 kb on + strand, within EX28DRAFT_0987 at 989.646 kb on + strand, within EX28DRAFT_0987 at 989.647 kb on - strand, within EX28DRAFT_0987 at 989.647 kb on - strand, within EX28DRAFT_0987 at 989.647 kb on - strand, within EX28DRAFT_0987 at 989.684 kb on - strand, within EX28DRAFT_0987 at 989.709 kb on + strand, within EX28DRAFT_0987 at 989.709 kb on + strand, within EX28DRAFT_0987 at 989.785 kb on + strand, within EX28DRAFT_0987 at 989.785 kb on + strand, within EX28DRAFT_0987 at 990.059 kb on + strand, within EX28DRAFT_0987 at 990.060 kb on - strand, within EX28DRAFT_0987 at 990.154 kb on + strand at 990.252 kb on + strand at 990.310 kb on + strand at 990.310 kb on + strand at 990.311 kb on - strand at 990.545 kb on + strand, within EX28DRAFT_0988 at 990.545 kb on + strand, within EX28DRAFT_0988 at 990.545 kb on + strand, within EX28DRAFT_0988 at 990.545 kb on + strand, within EX28DRAFT_0988 at 990.545 kb on + strand, within EX28DRAFT_0988 at 990.546 kb on - strand, within EX28DRAFT_0988 at 990.546 kb on - strand, within EX28DRAFT_0988 at 990.546 kb on - strand, within EX28DRAFT_0988 at 990.897 kb on + strand, within EX28DRAFT_0988 at 990.962 kb on + strand at 990.962 kb on + strand at 990.963 kb on - strand at 990.963 kb on - strand at 990.976 kb on + strand at 990.976 kb on + strand at 991.166 kb on + strand, within EX28DRAFT_0989 at 991.233 kb on + strand, within EX28DRAFT_0989 at 991.233 kb on + strand, within EX28DRAFT_0989 at 991.234 kb on - strand, within EX28DRAFT_0989 at 991.234 kb on - strand, within EX28DRAFT_0989 at 991.250 kb on + strand, within EX28DRAFT_0989 at 991.251 kb on - strand, within EX28DRAFT_0989 at 991.260 kb on + strand, within EX28DRAFT_0989 at 991.359 kb on + strand, within EX28DRAFT_0989 at 991.370 kb on + strand, within EX28DRAFT_0989 at 991.535 kb on + strand, within EX28DRAFT_0989 at 991.549 kb on - strand, within EX28DRAFT_0989 at 991.603 kb on + strand, within EX28DRAFT_0989 at 991.617 kb on - strand, within EX28DRAFT_0989 at 991.924 kb on - strand, within EX28DRAFT_0989
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 989,489 - EX28DRAFT_0987 0.64 -2.0 989,490 + EX28DRAFT_0987 0.64 +0.1 989,491 - EX28DRAFT_0987 0.64 -1.6 989,491 - EX28DRAFT_0987 0.64 -0.6 989,491 - EX28DRAFT_0987 0.64 +1.8 989,491 - EX28DRAFT_0987 0.64 -0.7 989,497 + EX28DRAFT_0987 0.64 +0.4 989,600 + EX28DRAFT_0987 0.69 +2.2 989,646 + EX28DRAFT_0987 0.71 -0.4 989,647 - EX28DRAFT_0987 0.71 -0.1 989,647 - EX28DRAFT_0987 0.71 +1.0 989,647 - EX28DRAFT_0987 0.71 -0.1 989,684 - EX28DRAFT_0987 0.72 +0.2 989,709 + EX28DRAFT_0987 0.74 +0.7 989,709 + EX28DRAFT_0987 0.74 +0.7 989,785 + EX28DRAFT_0987 0.77 -0.3 989,785 + EX28DRAFT_0987 0.77 -0.2 990,059 + EX28DRAFT_0987 0.89 +0.9 990,060 - EX28DRAFT_0987 0.89 +0.8 990,154 + +0.2 990,252 + -0.4 990,310 + +0.1 990,310 + +0.2 990,311 - +0.8 990,545 + EX28DRAFT_0988 0.36 -0.8 990,545 + EX28DRAFT_0988 0.36 -2.6 990,545 + EX28DRAFT_0988 0.36 -1.7 990,545 + EX28DRAFT_0988 0.36 -2.1 990,545 + EX28DRAFT_0988 0.36 -2.6 990,546 - EX28DRAFT_0988 0.37 +0.3 990,546 - EX28DRAFT_0988 0.37 -1.0 990,546 - EX28DRAFT_0988 0.37 -0.9 990,897 + EX28DRAFT_0988 0.89 -2.2 990,962 + -1.4 990,962 + -0.9 990,963 - -0.5 990,963 - +0.9 990,976 + -0.1 990,976 + -0.4 991,166 + EX28DRAFT_0989 0.17 -1.7 991,233 + EX28DRAFT_0989 0.23 -1.4 991,233 + EX28DRAFT_0989 0.23 +0.3 991,234 - EX28DRAFT_0989 0.23 -0.5 991,234 - EX28DRAFT_0989 0.23 -0.2 991,250 + EX28DRAFT_0989 0.25 -2.4 991,251 - EX28DRAFT_0989 0.25 +0.4 991,260 + EX28DRAFT_0989 0.26 +1.6 991,359 + EX28DRAFT_0989 0.35 -0.1 991,370 + EX28DRAFT_0989 0.36 +0.5 991,535 + EX28DRAFT_0989 0.51 -0.5 991,549 - EX28DRAFT_0989 0.52 -2.7 991,603 + EX28DRAFT_0989 0.57 -4.2 991,617 - EX28DRAFT_0989 0.59 -0.8 991,924 - EX28DRAFT_0989 0.87 +1.2
Or see this region's nucleotide sequence