Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0987

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0986 and EX28DRAFT_0987 overlap by 7 nucleotidesEX28DRAFT_0987 and EX28DRAFT_0988 overlap by 11 nucleotidesEX28DRAFT_0988 and EX28DRAFT_0989 are separated by 13 nucleotides EX28DRAFT_0986: EX28DRAFT_0986 - Predicted dehydrogenases and related proteins, at 986,984 to 988,039 _0986 EX28DRAFT_0987: EX28DRAFT_0987 - Trehalose and maltose hydrolases (possible phosphorylases), at 988,033 to 990,312 _0987 EX28DRAFT_0988: EX28DRAFT_0988 - beta-phosphoglucomutase, at 990,302 to 990,967 _0988 EX28DRAFT_0989: EX28DRAFT_0989 - ABC-type sugar transport systems, ATPase components, at 990,981 to 992,063 _0989 Position (kb) 988 989 990 991Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 987.149 kb on - strand, within EX28DRAFT_0986at 987.441 kb on - strand, within EX28DRAFT_0986at 987.547 kb on + strand, within EX28DRAFT_0986at 987.548 kb on - strand, within EX28DRAFT_0986at 987.566 kb on + strand, within EX28DRAFT_0986at 987.566 kb on + strand, within EX28DRAFT_0986at 987.567 kb on - strand, within EX28DRAFT_0986at 987.607 kb on + strand, within EX28DRAFT_0986at 987.608 kb on - strand, within EX28DRAFT_0986at 987.608 kb on - strand, within EX28DRAFT_0986at 987.712 kb on + strand, within EX28DRAFT_0986at 987.831 kb on - strand, within EX28DRAFT_0986at 987.852 kb on + strand, within EX28DRAFT_0986at 987.895 kb on + strand, within EX28DRAFT_0986at 987.895 kb on + strand, within EX28DRAFT_0986at 987.895 kb on + strand, within EX28DRAFT_0986at 987.896 kb on - strand, within EX28DRAFT_0986at 987.896 kb on - strand, within EX28DRAFT_0986at 987.904 kb on + strand, within EX28DRAFT_0986at 987.905 kb on - strand, within EX28DRAFT_0986at 987.998 kb on + strandat 988.032 kb on + strandat 988.033 kb on - strandat 988.037 kb on + strandat 988.050 kb on - strandat 988.087 kb on - strandat 988.087 kb on - strandat 988.087 kb on - strandat 988.090 kb on + strandat 988.090 kb on + strandat 988.091 kb on - strandat 988.153 kb on + strandat 988.153 kb on + strandat 988.154 kb on - strandat 988.177 kb on + strandat 988.177 kb on + strandat 988.178 kb on - strandat 988.178 kb on - strandat 988.178 kb on - strandat 988.567 kb on + strand, within EX28DRAFT_0987at 988.583 kb on - strand, within EX28DRAFT_0987at 989.020 kb on + strand, within EX28DRAFT_0987at 989.020 kb on + strand, within EX28DRAFT_0987at 989.023 kb on - strand, within EX28DRAFT_0987at 989.489 kb on - strand, within EX28DRAFT_0987at 989.490 kb on + strand, within EX28DRAFT_0987at 989.491 kb on - strand, within EX28DRAFT_0987at 989.491 kb on - strand, within EX28DRAFT_0987at 989.491 kb on - strand, within EX28DRAFT_0987at 989.491 kb on - strand, within EX28DRAFT_0987at 989.497 kb on + strand, within EX28DRAFT_0987at 989.600 kb on + strand, within EX28DRAFT_0987at 989.646 kb on + strand, within EX28DRAFT_0987at 989.647 kb on - strand, within EX28DRAFT_0987at 989.647 kb on - strand, within EX28DRAFT_0987at 989.647 kb on - strand, within EX28DRAFT_0987at 989.684 kb on - strand, within EX28DRAFT_0987at 989.709 kb on + strand, within EX28DRAFT_0987at 989.709 kb on + strand, within EX28DRAFT_0987at 989.785 kb on + strand, within EX28DRAFT_0987at 989.785 kb on + strand, within EX28DRAFT_0987at 990.059 kb on + strand, within EX28DRAFT_0987at 990.060 kb on - strand, within EX28DRAFT_0987at 990.154 kb on + strandat 990.252 kb on + strandat 990.310 kb on + strandat 990.310 kb on + strandat 990.311 kb on - strandat 990.545 kb on + strand, within EX28DRAFT_0988at 990.545 kb on + strand, within EX28DRAFT_0988at 990.545 kb on + strand, within EX28DRAFT_0988at 990.545 kb on + strand, within EX28DRAFT_0988at 990.545 kb on + strand, within EX28DRAFT_0988at 990.546 kb on - strand, within EX28DRAFT_0988at 990.546 kb on - strand, within EX28DRAFT_0988at 990.546 kb on - strand, within EX28DRAFT_0988at 990.897 kb on + strand, within EX28DRAFT_0988at 990.962 kb on + strandat 990.962 kb on + strandat 990.963 kb on - strandat 990.963 kb on - strandat 990.976 kb on + strandat 990.976 kb on + strandat 991.166 kb on + strand, within EX28DRAFT_0989at 991.233 kb on + strand, within EX28DRAFT_0989at 991.233 kb on + strand, within EX28DRAFT_0989at 991.234 kb on - strand, within EX28DRAFT_0989at 991.234 kb on - strand, within EX28DRAFT_0989at 991.250 kb on + strand, within EX28DRAFT_0989at 991.251 kb on - strand, within EX28DRAFT_0989at 991.260 kb on + strand, within EX28DRAFT_0989

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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987,149 - EX28DRAFT_0986 0.16 -1.0
987,441 - EX28DRAFT_0986 0.43 -1.2
987,547 + EX28DRAFT_0986 0.53 +1.1
987,548 - EX28DRAFT_0986 0.53 -1.2
987,566 + EX28DRAFT_0986 0.55 +0.1
987,566 + EX28DRAFT_0986 0.55 -0.9
987,567 - EX28DRAFT_0986 0.55 -0.3
987,607 + EX28DRAFT_0986 0.59 -0.9
987,608 - EX28DRAFT_0986 0.59 +0.2
987,608 - EX28DRAFT_0986 0.59 +3.6
987,712 + EX28DRAFT_0986 0.69 -1.1
987,831 - EX28DRAFT_0986 0.80 -0.7
987,852 + EX28DRAFT_0986 0.82 -1.0
987,895 + EX28DRAFT_0986 0.86 -0.4
987,895 + EX28DRAFT_0986 0.86 +0.8
987,895 + EX28DRAFT_0986 0.86 -0.4
987,896 - EX28DRAFT_0986 0.86 -0.0
987,896 - EX28DRAFT_0986 0.86 -0.3
987,904 + EX28DRAFT_0986 0.87 +1.0
987,905 - EX28DRAFT_0986 0.87 -1.1
987,998 + +0.2
988,032 + +0.0
988,033 - +0.8
988,037 + -0.6
988,050 - +2.2
988,087 - +0.7
988,087 - -1.2
988,087 - +1.0
988,090 + -1.6
988,090 + -0.2
988,091 - -2.0
988,153 + +0.7
988,153 + -3.9
988,154 - +0.1
988,177 + +0.8
988,177 + -0.5
988,178 - -2.0
988,178 - +1.2
988,178 - +0.4
988,567 + EX28DRAFT_0987 0.23 -0.2
988,583 - EX28DRAFT_0987 0.24 +2.9
989,020 + EX28DRAFT_0987 0.43 -0.7
989,020 + EX28DRAFT_0987 0.43 +2.2
989,023 - EX28DRAFT_0987 0.43 -0.6
989,489 - EX28DRAFT_0987 0.64 -2.0
989,490 + EX28DRAFT_0987 0.64 +0.1
989,491 - EX28DRAFT_0987 0.64 -1.6
989,491 - EX28DRAFT_0987 0.64 -0.6
989,491 - EX28DRAFT_0987 0.64 +1.8
989,491 - EX28DRAFT_0987 0.64 -0.7
989,497 + EX28DRAFT_0987 0.64 +0.4
989,600 + EX28DRAFT_0987 0.69 +2.2
989,646 + EX28DRAFT_0987 0.71 -0.4
989,647 - EX28DRAFT_0987 0.71 -0.1
989,647 - EX28DRAFT_0987 0.71 +1.0
989,647 - EX28DRAFT_0987 0.71 -0.1
989,684 - EX28DRAFT_0987 0.72 +0.2
989,709 + EX28DRAFT_0987 0.74 +0.7
989,709 + EX28DRAFT_0987 0.74 +0.7
989,785 + EX28DRAFT_0987 0.77 -0.3
989,785 + EX28DRAFT_0987 0.77 -0.2
990,059 + EX28DRAFT_0987 0.89 +0.9
990,060 - EX28DRAFT_0987 0.89 +0.8
990,154 + +0.2
990,252 + -0.4
990,310 + +0.1
990,310 + +0.2
990,311 - +0.8
990,545 + EX28DRAFT_0988 0.36 -0.8
990,545 + EX28DRAFT_0988 0.36 -2.6
990,545 + EX28DRAFT_0988 0.36 -1.7
990,545 + EX28DRAFT_0988 0.36 -2.1
990,545 + EX28DRAFT_0988 0.36 -2.6
990,546 - EX28DRAFT_0988 0.37 +0.3
990,546 - EX28DRAFT_0988 0.37 -1.0
990,546 - EX28DRAFT_0988 0.37 -0.9
990,897 + EX28DRAFT_0988 0.89 -2.2
990,962 + -1.4
990,962 + -0.9
990,963 - -0.5
990,963 - +0.9
990,976 + -0.1
990,976 + -0.4
991,166 + EX28DRAFT_0989 0.17 -1.7
991,233 + EX28DRAFT_0989 0.23 -1.4
991,233 + EX28DRAFT_0989 0.23 +0.3
991,234 - EX28DRAFT_0989 0.23 -0.5
991,234 - EX28DRAFT_0989 0.23 -0.2
991,250 + EX28DRAFT_0989 0.25 -2.4
991,251 - EX28DRAFT_0989 0.25 +0.4
991,260 + EX28DRAFT_0989 0.26 +1.6

Or see this region's nucleotide sequence