Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0974 and EX28DRAFT_0975 are separated by 88 nucleotides EX28DRAFT_0975 and EX28DRAFT_0976 are separated by 166 nucleotides EX28DRAFT_0976 and EX28DRAFT_0977 are separated by 49 nucleotides
EX28DRAFT_0974: EX28DRAFT_0974 - ABC-type oligopeptide transport system, periplasmic component, at 975,736 to 977,376
_0974
EX28DRAFT_0975: EX28DRAFT_0975 - psp operon transcriptional activator PspF, at 977,465 to 978,442
_0975
EX28DRAFT_0976: EX28DRAFT_0976 - phage shock protein A (PspA) family protein, at 978,609 to 979,277
_0976
EX28DRAFT_0977: EX28DRAFT_0977 - phage shock protein B, at 979,327 to 979,551
_0977
Position (kb) 977
978
979 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 976.485 kb on - strand, within EX28DRAFT_0974 at 976.492 kb on - strand, within EX28DRAFT_0974 at 976.637 kb on - strand, within EX28DRAFT_0974 at 976.966 kb on - strand, within EX28DRAFT_0974 at 977.508 kb on + strand at 977.546 kb on - strand at 977.548 kb on - strand at 977.548 kb on - strand at 977.548 kb on - strand at 977.609 kb on + strand, within EX28DRAFT_0975 at 978.066 kb on + strand, within EX28DRAFT_0975 at 978.262 kb on + strand, within EX28DRAFT_0975 at 978.263 kb on - strand, within EX28DRAFT_0975 at 978.291 kb on + strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975 at 978.595 kb on - strand at 978.743 kb on + strand, within EX28DRAFT_0976 at 978.854 kb on + strand, within EX28DRAFT_0976 at 979.130 kb on + strand, within EX28DRAFT_0976 at 979.278 kb on + strand at 979.278 kb on + strand at 979.310 kb on + strand at 979.310 kb on + strand at 979.311 kb on - strand at 979.322 kb on + strand at 979.402 kb on + strand, within EX28DRAFT_0977
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 976,485 - EX28DRAFT_0974 0.46 -1.4 976,492 - EX28DRAFT_0974 0.46 -1.4 976,637 - EX28DRAFT_0974 0.55 +1.2 976,966 - EX28DRAFT_0974 0.75 -4.8 977,508 + +0.6 977,546 - +1.6 977,548 - +2.4 977,548 - +1.1 977,548 - +0.4 977,609 + EX28DRAFT_0975 0.15 +0.5 978,066 + EX28DRAFT_0975 0.61 +0.5 978,262 + EX28DRAFT_0975 0.81 -4.4 978,263 - EX28DRAFT_0975 0.82 +0.7 978,291 + EX28DRAFT_0975 0.84 +1.7 978,292 - EX28DRAFT_0975 0.85 -0.4 978,292 - EX28DRAFT_0975 0.85 +0.7 978,595 - -0.4 978,743 + EX28DRAFT_0976 0.20 -2.6 978,854 + EX28DRAFT_0976 0.37 +0.6 979,130 + EX28DRAFT_0976 0.78 +0.3 979,278 + +4.6 979,278 + +0.8 979,310 + -0.8 979,310 + -2.0 979,311 - -0.2 979,322 + +0.6 979,402 + EX28DRAFT_0977 0.33 +1.0
Or see this region's nucleotide sequence