Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0969

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0968 and EX28DRAFT_0969 overlap by 20 nucleotidesEX28DRAFT_0969 and EX28DRAFT_0970 are separated by 162 nucleotidesEX28DRAFT_0970 and EX28DRAFT_0971 are separated by 1 nucleotides EX28DRAFT_0968: EX28DRAFT_0968 - Signal transduction histidine kinase, at 969,948 to 971,012 _0968 EX28DRAFT_0969: EX28DRAFT_0969 - TupA-like ATPgrasp, at 970,993 to 971,934 _0969 EX28DRAFT_0970: EX28DRAFT_0970 - ABC-type antimicrobial peptide transport system, ATPase component, at 972,097 to 972,903 _0970 EX28DRAFT_0971: EX28DRAFT_0971 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 972,905 to 973,897 _0971 Position (kb) 970 971 972Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 970.007 kb on + strandat 970.028 kb on - strandat 970.028 kb on - strandat 970.152 kb on - strand, within EX28DRAFT_0968at 970.157 kb on + strand, within EX28DRAFT_0968at 970.184 kb on - strand, within EX28DRAFT_0968at 970.411 kb on + strand, within EX28DRAFT_0968at 970.411 kb on + strand, within EX28DRAFT_0968at 970.412 kb on - strand, within EX28DRAFT_0968at 970.412 kb on - strand, within EX28DRAFT_0968at 970.472 kb on + strand, within EX28DRAFT_0968at 970.473 kb on - strand, within EX28DRAFT_0968at 970.551 kb on + strand, within EX28DRAFT_0968at 970.729 kb on + strand, within EX28DRAFT_0968at 970.734 kb on + strand, within EX28DRAFT_0968at 970.735 kb on - strand, within EX28DRAFT_0968at 970.735 kb on - strand, within EX28DRAFT_0968at 970.788 kb on + strand, within EX28DRAFT_0968at 970.789 kb on - strand, within EX28DRAFT_0968at 970.789 kb on - strand, within EX28DRAFT_0968at 970.789 kb on - strand, within EX28DRAFT_0968at 970.791 kb on - strand, within EX28DRAFT_0968at 970.796 kb on + strand, within EX28DRAFT_0968at 970.952 kb on + strandat 970.952 kb on + strandat 970.952 kb on + strandat 970.952 kb on + strandat 970.952 kb on + strandat 970.956 kb on + strandat 970.957 kb on - strandat 970.957 kb on - strandat 970.957 kb on - strandat 970.957 kb on - strandat 970.959 kb on - strandat 970.984 kb on + strandat 970.985 kb on - strandat 970.988 kb on + strandat 971.048 kb on - strandat 971.065 kb on + strandat 971.070 kb on + strandat 971.070 kb on + strandat 971.070 kb on + strandat 971.070 kb on + strandat 971.071 kb on - strandat 971.071 kb on - strandat 971.125 kb on + strand, within EX28DRAFT_0969at 971.138 kb on + strand, within EX28DRAFT_0969at 971.160 kb on + strand, within EX28DRAFT_0969at 971.160 kb on + strand, within EX28DRAFT_0969at 971.161 kb on - strand, within EX28DRAFT_0969at 971.284 kb on + strand, within EX28DRAFT_0969at 971.284 kb on + strand, within EX28DRAFT_0969at 971.285 kb on - strand, within EX28DRAFT_0969at 971.285 kb on - strand, within EX28DRAFT_0969at 971.304 kb on - strand, within EX28DRAFT_0969at 971.350 kb on + strand, within EX28DRAFT_0969at 971.350 kb on + strand, within EX28DRAFT_0969at 971.350 kb on + strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.355 kb on - strand, within EX28DRAFT_0969at 971.435 kb on + strand, within EX28DRAFT_0969at 971.436 kb on - strand, within EX28DRAFT_0969at 971.449 kb on + strand, within EX28DRAFT_0969at 971.450 kb on - strand, within EX28DRAFT_0969at 971.450 kb on - strand, within EX28DRAFT_0969at 971.450 kb on - strand, within EX28DRAFT_0969at 971.460 kb on + strand, within EX28DRAFT_0969at 971.566 kb on - strand, within EX28DRAFT_0969at 971.569 kb on + strand, within EX28DRAFT_0969at 971.569 kb on + strand, within EX28DRAFT_0969at 971.572 kb on + strand, within EX28DRAFT_0969at 971.665 kb on + strand, within EX28DRAFT_0969at 971.748 kb on + strand, within EX28DRAFT_0969at 971.777 kb on - strand, within EX28DRAFT_0969at 971.842 kb on + strandat 972.025 kb on - strandat 972.288 kb on - strand, within EX28DRAFT_0970at 972.498 kb on + strand, within EX28DRAFT_0970at 972.798 kb on + strand, within EX28DRAFT_0970

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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970,007 + +0.7
970,028 - -2.5
970,028 - +0.9
970,152 - EX28DRAFT_0968 0.19 -1.8
970,157 + EX28DRAFT_0968 0.20 -0.1
970,184 - EX28DRAFT_0968 0.22 +1.6
970,411 + EX28DRAFT_0968 0.43 -0.1
970,411 + EX28DRAFT_0968 0.43 +0.2
970,412 - EX28DRAFT_0968 0.44 -1.1
970,412 - EX28DRAFT_0968 0.44 -0.7
970,472 + EX28DRAFT_0968 0.49 -0.2
970,473 - EX28DRAFT_0968 0.49 -3.8
970,551 + EX28DRAFT_0968 0.57 +0.5
970,729 + EX28DRAFT_0968 0.73 +0.6
970,734 + EX28DRAFT_0968 0.74 -0.6
970,735 - EX28DRAFT_0968 0.74 +1.8
970,735 - EX28DRAFT_0968 0.74 -1.0
970,788 + EX28DRAFT_0968 0.79 +0.0
970,789 - EX28DRAFT_0968 0.79 -0.7
970,789 - EX28DRAFT_0968 0.79 +0.7
970,789 - EX28DRAFT_0968 0.79 +2.5
970,791 - EX28DRAFT_0968 0.79 -0.2
970,796 + EX28DRAFT_0968 0.80 -2.2
970,952 + +0.6
970,952 + -1.7
970,952 + +0.4
970,952 + +0.7
970,952 + -1.7
970,956 + +0.7
970,957 - -0.7
970,957 - +0.2
970,957 - -0.4
970,957 - +1.3
970,959 - +1.4
970,984 + -0.1
970,985 - -0.6
970,988 + +1.5
971,048 - +0.2
971,065 + +0.4
971,070 + +0.3
971,070 + +0.8
971,070 + +1.4
971,070 + -2.8
971,071 - +1.7
971,071 - +1.0
971,125 + EX28DRAFT_0969 0.14 +1.4
971,138 + EX28DRAFT_0969 0.15 -0.3
971,160 + EX28DRAFT_0969 0.18 -0.2
971,160 + EX28DRAFT_0969 0.18 +0.0
971,161 - EX28DRAFT_0969 0.18 -0.5
971,284 + EX28DRAFT_0969 0.31 -0.5
971,284 + EX28DRAFT_0969 0.31 +0.9
971,285 - EX28DRAFT_0969 0.31 -1.9
971,285 - EX28DRAFT_0969 0.31 -1.8
971,304 - EX28DRAFT_0969 0.33 +0.5
971,350 + EX28DRAFT_0969 0.38 -4.1
971,350 + EX28DRAFT_0969 0.38 -1.9
971,350 + EX28DRAFT_0969 0.38 -2.4
971,351 - EX28DRAFT_0969 0.38 +0.5
971,351 - EX28DRAFT_0969 0.38 -0.4
971,351 - EX28DRAFT_0969 0.38 -0.7
971,351 - EX28DRAFT_0969 0.38 +1.2
971,355 - EX28DRAFT_0969 0.38 +0.2
971,435 + EX28DRAFT_0969 0.47 -1.4
971,436 - EX28DRAFT_0969 0.47 +0.4
971,449 + EX28DRAFT_0969 0.48 -0.7
971,450 - EX28DRAFT_0969 0.49 +0.3
971,450 - EX28DRAFT_0969 0.49 +0.4
971,450 - EX28DRAFT_0969 0.49 +0.5
971,460 + EX28DRAFT_0969 0.50 -0.7
971,566 - EX28DRAFT_0969 0.61 -3.9
971,569 + EX28DRAFT_0969 0.61 +1.9
971,569 + EX28DRAFT_0969 0.61 -0.6
971,572 + EX28DRAFT_0969 0.61 -1.0
971,665 + EX28DRAFT_0969 0.71 +1.4
971,748 + EX28DRAFT_0969 0.80 +0.4
971,777 - EX28DRAFT_0969 0.83 -1.7
971,842 + -0.5
972,025 - +0.0
972,288 - EX28DRAFT_0970 0.24 +1.6
972,498 + EX28DRAFT_0970 0.50 -1.0
972,798 + EX28DRAFT_0970 0.87 -1.5

Or see this region's nucleotide sequence