Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0967

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0965 and EX28DRAFT_0966 are separated by 123 nucleotidesEX28DRAFT_0966 and EX28DRAFT_0967 are separated by 202 nucleotidesEX28DRAFT_0967 and EX28DRAFT_0968 overlap by 4 nucleotides EX28DRAFT_0965: EX28DRAFT_0965 - ABC transporter transmembrane region, at 967,554 to 968,465 _0965 EX28DRAFT_0966: EX28DRAFT_0966 - hypothetical protein, at 968,589 to 969,044 _0966 EX28DRAFT_0967: EX28DRAFT_0967 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 969,247 to 969,951 _0967 EX28DRAFT_0968: EX28DRAFT_0968 - Signal transduction histidine kinase, at 969,948 to 971,012 _0968 Position (kb) 969 970Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 968.257 kb on + strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965at 968.603 kb on + strandat 968.691 kb on + strand, within EX28DRAFT_0966at 968.708 kb on + strand, within EX28DRAFT_0966at 968.711 kb on + strand, within EX28DRAFT_0966at 968.791 kb on - strand, within EX28DRAFT_0966at 968.824 kb on + strand, within EX28DRAFT_0966at 968.825 kb on - strand, within EX28DRAFT_0966at 968.825 kb on - strand, within EX28DRAFT_0966at 968.895 kb on - strand, within EX28DRAFT_0966at 968.932 kb on + strand, within EX28DRAFT_0966at 968.935 kb on - strand, within EX28DRAFT_0966at 969.135 kb on + strandat 969.205 kb on - strandat 969.302 kb on + strandat 969.303 kb on - strandat 969.314 kb on - strandat 969.317 kb on + strandat 969.387 kb on + strand, within EX28DRAFT_0967at 969.402 kb on - strand, within EX28DRAFT_0967at 969.443 kb on + strand, within EX28DRAFT_0967at 969.443 kb on + strand, within EX28DRAFT_0967at 969.444 kb on - strand, within EX28DRAFT_0967at 969.447 kb on + strand, within EX28DRAFT_0967at 969.484 kb on - strand, within EX28DRAFT_0967at 969.548 kb on - strand, within EX28DRAFT_0967at 969.660 kb on + strand, within EX28DRAFT_0967at 969.686 kb on - strand, within EX28DRAFT_0967at 969.749 kb on + strand, within EX28DRAFT_0967at 969.750 kb on - strand, within EX28DRAFT_0967at 969.754 kb on - strand, within EX28DRAFT_0967at 969.829 kb on - strand, within EX28DRAFT_0967at 969.829 kb on - strand, within EX28DRAFT_0967at 969.855 kb on + strand, within EX28DRAFT_0967at 969.987 kb on + strandat 969.987 kb on + strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.989 kb on + strandat 969.990 kb on - strandat 969.990 kb on - strandat 969.990 kb on - strandat 970.007 kb on + strandat 970.028 kb on - strandat 970.028 kb on - strandat 970.152 kb on - strand, within EX28DRAFT_0968at 970.157 kb on + strand, within EX28DRAFT_0968at 970.184 kb on - strand, within EX28DRAFT_0968at 970.411 kb on + strand, within EX28DRAFT_0968at 970.411 kb on + strand, within EX28DRAFT_0968at 970.412 kb on - strand, within EX28DRAFT_0968at 970.412 kb on - strand, within EX28DRAFT_0968at 970.472 kb on + strand, within EX28DRAFT_0968at 970.473 kb on - strand, within EX28DRAFT_0968at 970.551 kb on + strand, within EX28DRAFT_0968at 970.729 kb on + strand, within EX28DRAFT_0968at 970.734 kb on + strand, within EX28DRAFT_0968at 970.735 kb on - strand, within EX28DRAFT_0968at 970.735 kb on - strand, within EX28DRAFT_0968at 970.788 kb on + strand, within EX28DRAFT_0968at 970.789 kb on - strand, within EX28DRAFT_0968at 970.789 kb on - strand, within EX28DRAFT_0968at 970.789 kb on - strand, within EX28DRAFT_0968at 970.791 kb on - strand, within EX28DRAFT_0968at 970.796 kb on + strand, within EX28DRAFT_0968

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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968,257 + EX28DRAFT_0965 0.77 +0.3
968,258 - EX28DRAFT_0965 0.77 +0.7
968,258 - EX28DRAFT_0965 0.77 -0.7
968,603 + +0.8
968,691 + EX28DRAFT_0966 0.22 +0.2
968,708 + EX28DRAFT_0966 0.26 -3.2
968,711 + EX28DRAFT_0966 0.27 -0.7
968,791 - EX28DRAFT_0966 0.44 +0.4
968,824 + EX28DRAFT_0966 0.52 +0.4
968,825 - EX28DRAFT_0966 0.52 -1.2
968,825 - EX28DRAFT_0966 0.52 -0.5
968,895 - EX28DRAFT_0966 0.67 -0.2
968,932 + EX28DRAFT_0966 0.75 -0.4
968,935 - EX28DRAFT_0966 0.76 -1.5
969,135 + -0.3
969,205 - -2.8
969,302 + +0.1
969,303 - +1.0
969,314 - -0.1
969,317 + +0.7
969,387 + EX28DRAFT_0967 0.20 +1.1
969,402 - EX28DRAFT_0967 0.22 -1.0
969,443 + EX28DRAFT_0967 0.28 -0.1
969,443 + EX28DRAFT_0967 0.28 +0.5
969,444 - EX28DRAFT_0967 0.28 -3.1
969,447 + EX28DRAFT_0967 0.28 +2.6
969,484 - EX28DRAFT_0967 0.34 -0.4
969,548 - EX28DRAFT_0967 0.43 +1.7
969,660 + EX28DRAFT_0967 0.59 -1.5
969,686 - EX28DRAFT_0967 0.62 -0.6
969,749 + EX28DRAFT_0967 0.71 +0.5
969,750 - EX28DRAFT_0967 0.71 -0.8
969,754 - EX28DRAFT_0967 0.72 +1.2
969,829 - EX28DRAFT_0967 0.83 -0.6
969,829 - EX28DRAFT_0967 0.83 +1.0
969,855 + EX28DRAFT_0967 0.86 -0.1
969,987 + +0.6
969,987 + -1.0
969,988 - -2.1
969,988 - -1.6
969,988 - +0.5
969,988 - -0.7
969,988 - +0.6
969,988 - +1.5
969,988 - +0.0
969,989 + +0.0
969,990 - +0.0
969,990 - -0.5
969,990 - -0.0
970,007 + +0.7
970,028 - -2.5
970,028 - +0.9
970,152 - EX28DRAFT_0968 0.19 -1.8
970,157 + EX28DRAFT_0968 0.20 -0.1
970,184 - EX28DRAFT_0968 0.22 +1.6
970,411 + EX28DRAFT_0968 0.43 -0.1
970,411 + EX28DRAFT_0968 0.43 +0.2
970,412 - EX28DRAFT_0968 0.44 -1.1
970,412 - EX28DRAFT_0968 0.44 -0.7
970,472 + EX28DRAFT_0968 0.49 -0.2
970,473 - EX28DRAFT_0968 0.49 -3.8
970,551 + EX28DRAFT_0968 0.57 +0.5
970,729 + EX28DRAFT_0968 0.73 +0.6
970,734 + EX28DRAFT_0968 0.74 -0.6
970,735 - EX28DRAFT_0968 0.74 +1.8
970,735 - EX28DRAFT_0968 0.74 -1.0
970,788 + EX28DRAFT_0968 0.79 +0.0
970,789 - EX28DRAFT_0968 0.79 -0.7
970,789 - EX28DRAFT_0968 0.79 +0.7
970,789 - EX28DRAFT_0968 0.79 +2.5
970,791 - EX28DRAFT_0968 0.79 -0.2
970,796 + EX28DRAFT_0968 0.80 -2.2

Or see this region's nucleotide sequence