Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0966

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0965 and EX28DRAFT_0966 are separated by 123 nucleotidesEX28DRAFT_0966 and EX28DRAFT_0967 are separated by 202 nucleotidesEX28DRAFT_0967 and EX28DRAFT_0968 overlap by 4 nucleotides EX28DRAFT_0965: EX28DRAFT_0965 - ABC transporter transmembrane region, at 967,554 to 968,465 _0965 EX28DRAFT_0966: EX28DRAFT_0966 - hypothetical protein, at 968,589 to 969,044 _0966 EX28DRAFT_0967: EX28DRAFT_0967 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 969,247 to 969,951 _0967 EX28DRAFT_0968: EX28DRAFT_0968 - Signal transduction histidine kinase, at 969,948 to 971,012 _0968 Position (kb) 968 969 970Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 967.675 kb on + strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.695 kb on - strand, within EX28DRAFT_0965at 967.804 kb on - strand, within EX28DRAFT_0965at 967.811 kb on + strand, within EX28DRAFT_0965at 967.835 kb on - strand, within EX28DRAFT_0965at 967.874 kb on - strand, within EX28DRAFT_0965at 967.965 kb on + strand, within EX28DRAFT_0965at 968.048 kb on + strand, within EX28DRAFT_0965at 968.049 kb on - strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.087 kb on - strand, within EX28DRAFT_0965at 968.087 kb on - strand, within EX28DRAFT_0965at 968.138 kb on - strand, within EX28DRAFT_0965at 968.237 kb on + strand, within EX28DRAFT_0965at 968.237 kb on + strand, within EX28DRAFT_0965at 968.238 kb on - strand, within EX28DRAFT_0965at 968.244 kb on + strand, within EX28DRAFT_0965at 968.244 kb on + strand, within EX28DRAFT_0965at 968.245 kb on - strand, within EX28DRAFT_0965at 968.245 kb on - strand, within EX28DRAFT_0965at 968.257 kb on + strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965at 968.603 kb on + strandat 968.691 kb on + strand, within EX28DRAFT_0966at 968.708 kb on + strand, within EX28DRAFT_0966at 968.711 kb on + strand, within EX28DRAFT_0966at 968.791 kb on - strand, within EX28DRAFT_0966at 968.824 kb on + strand, within EX28DRAFT_0966at 968.825 kb on - strand, within EX28DRAFT_0966at 968.825 kb on - strand, within EX28DRAFT_0966at 968.895 kb on - strand, within EX28DRAFT_0966at 968.932 kb on + strand, within EX28DRAFT_0966at 968.935 kb on - strand, within EX28DRAFT_0966at 969.135 kb on + strandat 969.205 kb on - strandat 969.302 kb on + strandat 969.303 kb on - strandat 969.314 kb on - strandat 969.317 kb on + strandat 969.387 kb on + strand, within EX28DRAFT_0967at 969.402 kb on - strand, within EX28DRAFT_0967at 969.443 kb on + strand, within EX28DRAFT_0967at 969.443 kb on + strand, within EX28DRAFT_0967at 969.444 kb on - strand, within EX28DRAFT_0967at 969.447 kb on + strand, within EX28DRAFT_0967at 969.484 kb on - strand, within EX28DRAFT_0967at 969.548 kb on - strand, within EX28DRAFT_0967at 969.660 kb on + strand, within EX28DRAFT_0967at 969.686 kb on - strand, within EX28DRAFT_0967at 969.749 kb on + strand, within EX28DRAFT_0967at 969.750 kb on - strand, within EX28DRAFT_0967at 969.754 kb on - strand, within EX28DRAFT_0967at 969.829 kb on - strand, within EX28DRAFT_0967at 969.829 kb on - strand, within EX28DRAFT_0967at 969.855 kb on + strand, within EX28DRAFT_0967at 969.987 kb on + strandat 969.987 kb on + strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.989 kb on + strandat 969.990 kb on - strandat 969.990 kb on - strandat 969.990 kb on - strandat 970.007 kb on + strandat 970.028 kb on - strandat 970.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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967,675 + EX28DRAFT_0965 0.13 -1.5
967,676 - EX28DRAFT_0965 0.13 -1.0
967,676 - EX28DRAFT_0965 0.13 -0.2
967,676 - EX28DRAFT_0965 0.13 -1.0
967,695 - EX28DRAFT_0965 0.15 -2.1
967,804 - EX28DRAFT_0965 0.27 -0.6
967,811 + EX28DRAFT_0965 0.28 +0.6
967,835 - EX28DRAFT_0965 0.31 -0.0
967,874 - EX28DRAFT_0965 0.35 -0.7
967,965 + EX28DRAFT_0965 0.45 -0.3
968,048 + EX28DRAFT_0965 0.54 -0.4
968,049 - EX28DRAFT_0965 0.54 +0.9
968,051 + EX28DRAFT_0965 0.54 -2.9
968,051 + EX28DRAFT_0965 0.54 -1.0
968,051 + EX28DRAFT_0965 0.54 -1.4
968,087 - EX28DRAFT_0965 0.58 -0.7
968,087 - EX28DRAFT_0965 0.58 +0.5
968,138 - EX28DRAFT_0965 0.64 -0.2
968,237 + EX28DRAFT_0965 0.75 +0.4
968,237 + EX28DRAFT_0965 0.75 +0.8
968,238 - EX28DRAFT_0965 0.75 +0.3
968,244 + EX28DRAFT_0965 0.76 +0.1
968,244 + EX28DRAFT_0965 0.76 -0.5
968,245 - EX28DRAFT_0965 0.76 +0.0
968,245 - EX28DRAFT_0965 0.76 -1.5
968,257 + EX28DRAFT_0965 0.77 +0.3
968,258 - EX28DRAFT_0965 0.77 +0.7
968,258 - EX28DRAFT_0965 0.77 -0.7
968,603 + +0.8
968,691 + EX28DRAFT_0966 0.22 +0.2
968,708 + EX28DRAFT_0966 0.26 -3.2
968,711 + EX28DRAFT_0966 0.27 -0.7
968,791 - EX28DRAFT_0966 0.44 +0.4
968,824 + EX28DRAFT_0966 0.52 +0.4
968,825 - EX28DRAFT_0966 0.52 -1.2
968,825 - EX28DRAFT_0966 0.52 -0.5
968,895 - EX28DRAFT_0966 0.67 -0.2
968,932 + EX28DRAFT_0966 0.75 -0.4
968,935 - EX28DRAFT_0966 0.76 -1.5
969,135 + -0.3
969,205 - -2.8
969,302 + +0.1
969,303 - +1.0
969,314 - -0.1
969,317 + +0.7
969,387 + EX28DRAFT_0967 0.20 +1.1
969,402 - EX28DRAFT_0967 0.22 -1.0
969,443 + EX28DRAFT_0967 0.28 -0.1
969,443 + EX28DRAFT_0967 0.28 +0.5
969,444 - EX28DRAFT_0967 0.28 -3.1
969,447 + EX28DRAFT_0967 0.28 +2.6
969,484 - EX28DRAFT_0967 0.34 -0.4
969,548 - EX28DRAFT_0967 0.43 +1.7
969,660 + EX28DRAFT_0967 0.59 -1.5
969,686 - EX28DRAFT_0967 0.62 -0.6
969,749 + EX28DRAFT_0967 0.71 +0.5
969,750 - EX28DRAFT_0967 0.71 -0.8
969,754 - EX28DRAFT_0967 0.72 +1.2
969,829 - EX28DRAFT_0967 0.83 -0.6
969,829 - EX28DRAFT_0967 0.83 +1.0
969,855 + EX28DRAFT_0967 0.86 -0.1
969,987 + +0.6
969,987 + -1.0
969,988 - -2.1
969,988 - -1.6
969,988 - +0.5
969,988 - -0.7
969,988 - +0.6
969,988 - +1.5
969,988 - +0.0
969,989 + +0.0
969,990 - +0.0
969,990 - -0.5
969,990 - -0.0
970,007 + +0.7
970,028 - -2.5
970,028 - +0.9

Or see this region's nucleotide sequence