Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0965

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0964 and EX28DRAFT_0965 are separated by 4 nucleotidesEX28DRAFT_0965 and EX28DRAFT_0966 are separated by 123 nucleotidesEX28DRAFT_0966 and EX28DRAFT_0967 are separated by 202 nucleotides EX28DRAFT_0964: EX28DRAFT_0964 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 964,454 to 967,549 _0964 EX28DRAFT_0965: EX28DRAFT_0965 - ABC transporter transmembrane region, at 967,554 to 968,465 _0965 EX28DRAFT_0966: EX28DRAFT_0966 - hypothetical protein, at 968,589 to 969,044 _0966 EX28DRAFT_0967: EX28DRAFT_0967 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 969,247 to 969,951 _0967 Position (kb) 967 968 969Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 967.080 kb on + strand, within EX28DRAFT_0964at 967.080 kb on + strand, within EX28DRAFT_0964at 967.081 kb on - strand, within EX28DRAFT_0964at 967.088 kb on + strand, within EX28DRAFT_0964at 967.089 kb on - strand, within EX28DRAFT_0964at 967.168 kb on + strand, within EX28DRAFT_0964at 967.169 kb on - strand, within EX28DRAFT_0964at 967.197 kb on - strand, within EX28DRAFT_0964at 967.197 kb on - strand, within EX28DRAFT_0964at 967.217 kb on - strand, within EX28DRAFT_0964at 967.320 kb on + strandat 967.321 kb on - strandat 967.330 kb on + strandat 967.330 kb on + strandat 967.330 kb on + strandat 967.330 kb on + strandat 967.375 kb on + strandat 967.375 kb on + strandat 967.375 kb on + strandat 967.417 kb on + strandat 967.567 kb on - strandat 967.567 kb on - strandat 967.567 kb on - strandat 967.675 kb on + strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.676 kb on - strand, within EX28DRAFT_0965at 967.695 kb on - strand, within EX28DRAFT_0965at 967.804 kb on - strand, within EX28DRAFT_0965at 967.811 kb on + strand, within EX28DRAFT_0965at 967.835 kb on - strand, within EX28DRAFT_0965at 967.874 kb on - strand, within EX28DRAFT_0965at 967.965 kb on + strand, within EX28DRAFT_0965at 968.048 kb on + strand, within EX28DRAFT_0965at 968.049 kb on - strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.051 kb on + strand, within EX28DRAFT_0965at 968.087 kb on - strand, within EX28DRAFT_0965at 968.087 kb on - strand, within EX28DRAFT_0965at 968.138 kb on - strand, within EX28DRAFT_0965at 968.237 kb on + strand, within EX28DRAFT_0965at 968.237 kb on + strand, within EX28DRAFT_0965at 968.238 kb on - strand, within EX28DRAFT_0965at 968.244 kb on + strand, within EX28DRAFT_0965at 968.244 kb on + strand, within EX28DRAFT_0965at 968.245 kb on - strand, within EX28DRAFT_0965at 968.245 kb on - strand, within EX28DRAFT_0965at 968.257 kb on + strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965at 968.258 kb on - strand, within EX28DRAFT_0965at 968.603 kb on + strandat 968.691 kb on + strand, within EX28DRAFT_0966at 968.708 kb on + strand, within EX28DRAFT_0966at 968.711 kb on + strand, within EX28DRAFT_0966at 968.791 kb on - strand, within EX28DRAFT_0966at 968.824 kb on + strand, within EX28DRAFT_0966at 968.825 kb on - strand, within EX28DRAFT_0966at 968.825 kb on - strand, within EX28DRAFT_0966at 968.895 kb on - strand, within EX28DRAFT_0966at 968.932 kb on + strand, within EX28DRAFT_0966at 968.935 kb on - strand, within EX28DRAFT_0966at 969.135 kb on + strandat 969.205 kb on - strandat 969.302 kb on + strandat 969.303 kb on - strandat 969.314 kb on - strandat 969.317 kb on + strandat 969.387 kb on + strand, within EX28DRAFT_0967at 969.402 kb on - strand, within EX28DRAFT_0967at 969.443 kb on + strand, within EX28DRAFT_0967at 969.443 kb on + strand, within EX28DRAFT_0967at 969.444 kb on - strand, within EX28DRAFT_0967at 969.447 kb on + strand, within EX28DRAFT_0967

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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967,080 + EX28DRAFT_0964 0.85 +0.1
967,080 + EX28DRAFT_0964 0.85 -0.4
967,081 - EX28DRAFT_0964 0.85 +1.1
967,088 + EX28DRAFT_0964 0.85 -0.8
967,089 - EX28DRAFT_0964 0.85 -1.1
967,168 + EX28DRAFT_0964 0.88 +2.0
967,169 - EX28DRAFT_0964 0.88 -0.7
967,197 - EX28DRAFT_0964 0.89 +0.5
967,197 - EX28DRAFT_0964 0.89 -2.5
967,217 - EX28DRAFT_0964 0.89 +1.3
967,320 + +0.2
967,321 - -1.7
967,330 + +1.3
967,330 + -3.3
967,330 + -0.2
967,330 + -0.7
967,375 + -0.3
967,375 + +1.2
967,375 + -1.7
967,417 + -2.1
967,567 - +0.7
967,567 - +0.6
967,567 - -0.1
967,675 + EX28DRAFT_0965 0.13 -1.5
967,676 - EX28DRAFT_0965 0.13 -1.0
967,676 - EX28DRAFT_0965 0.13 -0.2
967,676 - EX28DRAFT_0965 0.13 -1.0
967,695 - EX28DRAFT_0965 0.15 -2.1
967,804 - EX28DRAFT_0965 0.27 -0.6
967,811 + EX28DRAFT_0965 0.28 +0.6
967,835 - EX28DRAFT_0965 0.31 -0.0
967,874 - EX28DRAFT_0965 0.35 -0.7
967,965 + EX28DRAFT_0965 0.45 -0.3
968,048 + EX28DRAFT_0965 0.54 -0.4
968,049 - EX28DRAFT_0965 0.54 +0.9
968,051 + EX28DRAFT_0965 0.54 -2.9
968,051 + EX28DRAFT_0965 0.54 -1.0
968,051 + EX28DRAFT_0965 0.54 -1.4
968,087 - EX28DRAFT_0965 0.58 -0.7
968,087 - EX28DRAFT_0965 0.58 +0.5
968,138 - EX28DRAFT_0965 0.64 -0.2
968,237 + EX28DRAFT_0965 0.75 +0.4
968,237 + EX28DRAFT_0965 0.75 +0.8
968,238 - EX28DRAFT_0965 0.75 +0.3
968,244 + EX28DRAFT_0965 0.76 +0.1
968,244 + EX28DRAFT_0965 0.76 -0.5
968,245 - EX28DRAFT_0965 0.76 +0.0
968,245 - EX28DRAFT_0965 0.76 -1.5
968,257 + EX28DRAFT_0965 0.77 +0.3
968,258 - EX28DRAFT_0965 0.77 +0.7
968,258 - EX28DRAFT_0965 0.77 -0.7
968,603 + +0.8
968,691 + EX28DRAFT_0966 0.22 +0.2
968,708 + EX28DRAFT_0966 0.26 -3.2
968,711 + EX28DRAFT_0966 0.27 -0.7
968,791 - EX28DRAFT_0966 0.44 +0.4
968,824 + EX28DRAFT_0966 0.52 +0.4
968,825 - EX28DRAFT_0966 0.52 -1.2
968,825 - EX28DRAFT_0966 0.52 -0.5
968,895 - EX28DRAFT_0966 0.67 -0.2
968,932 + EX28DRAFT_0966 0.75 -0.4
968,935 - EX28DRAFT_0966 0.76 -1.5
969,135 + -0.3
969,205 - -2.8
969,302 + +0.1
969,303 - +1.0
969,314 - -0.1
969,317 + +0.7
969,387 + EX28DRAFT_0967 0.20 +1.1
969,402 - EX28DRAFT_0967 0.22 -1.0
969,443 + EX28DRAFT_0967 0.28 -0.1
969,443 + EX28DRAFT_0967 0.28 +0.5
969,444 - EX28DRAFT_0967 0.28 -3.1
969,447 + EX28DRAFT_0967 0.28 +2.6

Or see this region's nucleotide sequence