Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0959 and EX28DRAFT_0960 overlap by 4 nucleotides EX28DRAFT_0960 and EX28DRAFT_0961 are separated by 323 nucleotides
EX28DRAFT_0959: EX28DRAFT_0959 - Enoyl-CoA hydratase/carnithine racemase, at 957,051 to 957,920
_0959
EX28DRAFT_0960: EX28DRAFT_0960 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 957,917 to 959,908
_0960
EX28DRAFT_0961: EX28DRAFT_0961 - exoribonuclease II, at 960,232 to 962,166
_0961
Position (kb) 957
958
959
960 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 956.940 kb on + strand at 956.955 kb on + strand at 956.956 kb on - strand at 957.050 kb on + strand at 957.051 kb on - strand at 957.051 kb on - strand at 957.060 kb on - strand at 957.071 kb on + strand at 957.123 kb on + strand at 957.194 kb on - strand, within EX28DRAFT_0959 at 957.194 kb on - strand, within EX28DRAFT_0959 at 957.196 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.286 kb on - strand, within EX28DRAFT_0959 at 957.304 kb on + strand, within EX28DRAFT_0959 at 957.558 kb on + strand, within EX28DRAFT_0959 at 957.609 kb on + strand, within EX28DRAFT_0959 at 957.609 kb on + strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.687 kb on + strand, within EX28DRAFT_0959 at 957.687 kb on + strand, within EX28DRAFT_0959 at 957.818 kb on - strand, within EX28DRAFT_0959 at 957.856 kb on - strand at 957.856 kb on - strand at 957.918 kb on + strand at 958.127 kb on - strand, within EX28DRAFT_0960 at 958.127 kb on - strand, within EX28DRAFT_0960 at 958.136 kb on - strand, within EX28DRAFT_0960 at 958.300 kb on + strand, within EX28DRAFT_0960 at 958.338 kb on + strand, within EX28DRAFT_0960 at 958.338 kb on + strand, within EX28DRAFT_0960 at 958.371 kb on - strand, within EX28DRAFT_0960 at 958.371 kb on - strand, within EX28DRAFT_0960 at 958.528 kb on - strand, within EX28DRAFT_0960 at 958.534 kb on + strand, within EX28DRAFT_0960 at 958.764 kb on + strand, within EX28DRAFT_0960 at 958.764 kb on + strand, within EX28DRAFT_0960 at 958.851 kb on + strand, within EX28DRAFT_0960 at 958.851 kb on + strand, within EX28DRAFT_0960 at 958.852 kb on - strand, within EX28DRAFT_0960 at 958.852 kb on - strand, within EX28DRAFT_0960 at 958.862 kb on - strand, within EX28DRAFT_0960 at 958.936 kb on + strand, within EX28DRAFT_0960 at 959.050 kb on + strand, within EX28DRAFT_0960 at 959.051 kb on - strand, within EX28DRAFT_0960 at 959.051 kb on - strand, within EX28DRAFT_0960 at 959.097 kb on + strand, within EX28DRAFT_0960 at 959.260 kb on + strand, within EX28DRAFT_0960 at 959.260 kb on + strand, within EX28DRAFT_0960 at 959.361 kb on + strand, within EX28DRAFT_0960 at 959.362 kb on - strand, within EX28DRAFT_0960 at 959.437 kb on + strand, within EX28DRAFT_0960 at 959.438 kb on - strand, within EX28DRAFT_0960 at 959.438 kb on - strand, within EX28DRAFT_0960 at 959.442 kb on - strand, within EX28DRAFT_0960 at 959.442 kb on - strand, within EX28DRAFT_0960 at 959.481 kb on + strand, within EX28DRAFT_0960 at 959.500 kb on + strand, within EX28DRAFT_0960 at 959.615 kb on - strand, within EX28DRAFT_0960 at 959.728 kb on + strand at 959.944 kb on - strand at 960.020 kb on + strand at 960.020 kb on + strand at 960.021 kb on - strand at 960.025 kb on + strand at 960.025 kb on + strand at 960.025 kb on + strand at 960.096 kb on + strand at 960.101 kb on + strand at 960.106 kb on - strand at 960.106 kb on - strand at 960.109 kb on + strand at 960.110 kb on - strand at 960.110 kb on - strand at 960.141 kb on + strand at 960.142 kb on - strand at 960.330 kb on + strand at 960.662 kb on + strand, within EX28DRAFT_0961 at 960.662 kb on + strand, within EX28DRAFT_0961 at 960.692 kb on + strand, within EX28DRAFT_0961
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 956,940 + +0.1 956,955 + +0.3 956,956 - -1.2 957,050 + +0.2 957,051 - -4.1 957,051 - -1.9 957,060 - -0.7 957,071 + -0.7 957,123 + -1.1 957,194 - EX28DRAFT_0959 0.16 +0.2 957,194 - EX28DRAFT_0959 0.16 -0.5 957,196 + EX28DRAFT_0959 0.17 -1.0 957,285 + EX28DRAFT_0959 0.27 +0.5 957,285 + EX28DRAFT_0959 0.27 +0.1 957,285 + EX28DRAFT_0959 0.27 +1.5 957,285 + EX28DRAFT_0959 0.27 -0.4 957,286 - EX28DRAFT_0959 0.27 -0.8 957,304 + EX28DRAFT_0959 0.29 +1.2 957,558 + EX28DRAFT_0959 0.58 +0.4 957,609 + EX28DRAFT_0959 0.64 +0.4 957,609 + EX28DRAFT_0959 0.64 -0.2 957,610 - EX28DRAFT_0959 0.64 -1.1 957,610 - EX28DRAFT_0959 0.64 -0.2 957,610 - EX28DRAFT_0959 0.64 +0.4 957,687 + EX28DRAFT_0959 0.73 -2.7 957,687 + EX28DRAFT_0959 0.73 +1.4 957,818 - EX28DRAFT_0959 0.88 +0.2 957,856 - +0.2 957,856 - +0.5 957,918 + -0.6 958,127 - EX28DRAFT_0960 0.11 +4.1 958,127 - EX28DRAFT_0960 0.11 -0.8 958,136 - EX28DRAFT_0960 0.11 +4.1 958,300 + EX28DRAFT_0960 0.19 +3.6 958,338 + EX28DRAFT_0960 0.21 +0.5 958,338 + EX28DRAFT_0960 0.21 +3.8 958,371 - EX28DRAFT_0960 0.23 +3.3 958,371 - EX28DRAFT_0960 0.23 +4.4 958,528 - EX28DRAFT_0960 0.31 +2.4 958,534 + EX28DRAFT_0960 0.31 +0.7 958,764 + EX28DRAFT_0960 0.43 +3.8 958,764 + EX28DRAFT_0960 0.43 +2.0 958,851 + EX28DRAFT_0960 0.47 +3.9 958,851 + EX28DRAFT_0960 0.47 +3.0 958,852 - EX28DRAFT_0960 0.47 +2.9 958,852 - EX28DRAFT_0960 0.47 +2.6 958,862 - EX28DRAFT_0960 0.47 +4.2 958,936 + EX28DRAFT_0960 0.51 +3.7 959,050 + EX28DRAFT_0960 0.57 +2.2 959,051 - EX28DRAFT_0960 0.57 +2.5 959,051 - EX28DRAFT_0960 0.57 +3.3 959,097 + EX28DRAFT_0960 0.59 +3.4 959,260 + EX28DRAFT_0960 0.67 +1.0 959,260 + EX28DRAFT_0960 0.67 +4.1 959,361 + EX28DRAFT_0960 0.72 +2.6 959,362 - EX28DRAFT_0960 0.73 +1.9 959,437 + EX28DRAFT_0960 0.76 +1.2 959,438 - EX28DRAFT_0960 0.76 +3.5 959,438 - EX28DRAFT_0960 0.76 +2.2 959,442 - EX28DRAFT_0960 0.77 +0.8 959,442 - EX28DRAFT_0960 0.77 +2.8 959,481 + EX28DRAFT_0960 0.79 +5.6 959,500 + EX28DRAFT_0960 0.79 +1.5 959,615 - EX28DRAFT_0960 0.85 +1.2 959,728 + +4.1 959,944 - +1.5 960,020 + +2.5 960,020 + +1.2 960,021 - +0.6 960,025 + +2.8 960,025 + +2.9 960,025 + +3.7 960,096 + +0.8 960,101 + +1.9 960,106 - -1.4 960,106 - -1.4 960,109 + +0.6 960,110 - +1.0 960,110 - -0.3 960,141 + -0.7 960,142 - -3.5 960,330 + -1.0 960,662 + EX28DRAFT_0961 0.22 -0.7 960,662 + EX28DRAFT_0961 0.22 +0.0 960,692 + EX28DRAFT_0961 0.24 -2.0
Or see this region's nucleotide sequence