Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0951 and EX28DRAFT_0952 are separated by 148 nucleotides EX28DRAFT_0952 and EX28DRAFT_0953 are separated by 6 nucleotides
EX28DRAFT_0951: EX28DRAFT_0951 - Membrane-associated phospholipid phosphatase, at 951,609 to 952,409
_0951
EX28DRAFT_0952: EX28DRAFT_0952 - Predicted membrane protein, at 952,558 to 952,866
_0952
EX28DRAFT_0953: EX28DRAFT_0953 - Predicted N-acetylglucosaminyl transferase, at 952,873 to 954,042
_0953
Position (kb) 952
953 Strain fitness (log2 ratio) -2
-1
0
1 at 951.582 kb on + strand at 951.609 kb on - strand at 951.609 kb on - strand at 951.692 kb on + strand, within EX28DRAFT_0951 at 951.692 kb on + strand, within EX28DRAFT_0951 at 951.746 kb on + strand, within EX28DRAFT_0951 at 951.747 kb on - strand, within EX28DRAFT_0951 at 951.747 kb on - strand, within EX28DRAFT_0951 at 951.755 kb on + strand, within EX28DRAFT_0951 at 951.803 kb on + strand, within EX28DRAFT_0951 at 951.881 kb on + strand, within EX28DRAFT_0951 at 952.013 kb on - strand, within EX28DRAFT_0951 at 952.067 kb on + strand, within EX28DRAFT_0951 at 952.130 kb on + strand, within EX28DRAFT_0951 at 952.418 kb on - strand at 952.435 kb on + strand at 952.494 kb on + strand at 952.494 kb on + strand at 952.554 kb on + strand at 952.647 kb on + strand, within EX28DRAFT_0952 at 952.700 kb on + strand, within EX28DRAFT_0952
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 951,582 + -1.4 951,609 - -1.3 951,609 - -0.1 951,692 + EX28DRAFT_0951 0.10 -0.3 951,692 + EX28DRAFT_0951 0.10 -0.5 951,746 + EX28DRAFT_0951 0.17 -1.6 951,747 - EX28DRAFT_0951 0.17 -1.3 951,747 - EX28DRAFT_0951 0.17 +0.6 951,755 + EX28DRAFT_0951 0.18 +0.3 951,803 + EX28DRAFT_0951 0.24 -0.1 951,881 + EX28DRAFT_0951 0.34 +1.1 952,013 - EX28DRAFT_0951 0.50 -0.3 952,067 + EX28DRAFT_0951 0.57 +0.1 952,130 + EX28DRAFT_0951 0.65 +0.6 952,418 - -0.2 952,435 + -1.3 952,494 + +0.0 952,494 + +1.6 952,554 + +0.0 952,647 + EX28DRAFT_0952 0.29 -2.2 952,700 + EX28DRAFT_0952 0.46 -0.1
Or see this region's nucleotide sequence