Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0947 and EX28DRAFT_0948 are separated by 38 nucleotides EX28DRAFT_0948 and EX28DRAFT_0949 are separated by 398 nucleotides EX28DRAFT_0949 and EX28DRAFT_0950 are separated by 37 nucleotides EX28DRAFT_0950 and EX28DRAFT_0951 are separated by 164 nucleotides
EX28DRAFT_0947: EX28DRAFT_0947 - hypothetical protein, at 947,441 to 947,569
_0947
EX28DRAFT_0948: EX28DRAFT_0948 - hypothetical protein, at 947,608 to 947,742
_0948
EX28DRAFT_0949: EX28DRAFT_0949 - aconitate hydratase 1, at 948,141 to 950,816
_0949
EX28DRAFT_0950: EX28DRAFT_0950 - GTP cyclohydrolase II, at 950,854 to 951,444
_0950
EX28DRAFT_0951: EX28DRAFT_0951 - Membrane-associated phospholipid phosphatase, at 951,609 to 952,409
_0951
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 947.166 kb on - strand at 947.181 kb on + strand at 947.181 kb on + strand at 947.182 kb on - strand at 947.183 kb on + strand at 947.184 kb on - strand at 947.184 kb on - strand at 947.184 kb on - strand at 947.184 kb on - strand at 947.214 kb on - strand at 947.216 kb on - strand at 947.281 kb on - strand at 947.328 kb on - strand at 947.559 kb on - strand at 947.567 kb on + strand at 947.571 kb on + strand at 947.572 kb on - strand at 947.643 kb on + strand, within EX28DRAFT_0948 at 947.703 kb on + strand, within EX28DRAFT_0948 at 947.745 kb on + strand at 947.769 kb on + strand at 947.827 kb on - strand at 947.841 kb on - strand at 947.861 kb on + strand at 947.861 kb on + strand at 947.886 kb on + strand at 947.905 kb on + strand at 948.035 kb on - strand at 948.089 kb on + strand at 948.089 kb on + strand at 948.140 kb on + strand at 948.140 kb on + strand at 948.141 kb on - strand at 948.141 kb on - strand at 948.154 kb on + strand at 948.168 kb on - strand at 948.204 kb on + strand at 948.205 kb on - strand at 948.207 kb on + strand at 948.479 kb on + strand, within EX28DRAFT_0949 at 948.609 kb on + strand, within EX28DRAFT_0949 at 948.610 kb on - strand, within EX28DRAFT_0949 at 948.674 kb on + strand, within EX28DRAFT_0949 at 948.782 kb on + strand, within EX28DRAFT_0949 at 949.069 kb on - strand, within EX28DRAFT_0949 at 949.116 kb on + strand, within EX28DRAFT_0949 at 949.116 kb on + strand, within EX28DRAFT_0949 at 949.117 kb on - strand, within EX28DRAFT_0949 at 949.168 kb on - strand, within EX28DRAFT_0949 at 949.168 kb on - strand, within EX28DRAFT_0949 at 949.168 kb on - strand, within EX28DRAFT_0949 at 949.169 kb on + strand, within EX28DRAFT_0949 at 949.517 kb on - strand, within EX28DRAFT_0949 at 949.643 kb on + strand, within EX28DRAFT_0949 at 949.653 kb on - strand, within EX28DRAFT_0949 at 949.717 kb on + strand, within EX28DRAFT_0949 at 949.717 kb on + strand, within EX28DRAFT_0949 at 949.812 kb on + strand, within EX28DRAFT_0949 at 949.835 kb on + strand, within EX28DRAFT_0949 at 949.836 kb on - strand, within EX28DRAFT_0949 at 949.888 kb on - strand, within EX28DRAFT_0949 at 949.898 kb on + strand, within EX28DRAFT_0949 at 949.899 kb on - strand, within EX28DRAFT_0949 at 950.028 kb on - strand, within EX28DRAFT_0949 at 950.031 kb on + strand, within EX28DRAFT_0949 at 950.032 kb on - strand, within EX28DRAFT_0949 at 950.032 kb on - strand, within EX28DRAFT_0949 at 950.032 kb on - strand, within EX28DRAFT_0949 at 950.055 kb on + strand, within EX28DRAFT_0949 at 950.055 kb on + strand, within EX28DRAFT_0949 at 950.055 kb on + strand, within EX28DRAFT_0949 at 950.056 kb on - strand, within EX28DRAFT_0949 at 950.056 kb on - strand, within EX28DRAFT_0949 at 950.058 kb on - strand, within EX28DRAFT_0949 at 950.132 kb on - strand, within EX28DRAFT_0949 at 950.168 kb on + strand, within EX28DRAFT_0949 at 950.168 kb on + strand, within EX28DRAFT_0949 at 950.169 kb on - strand, within EX28DRAFT_0949 at 950.169 kb on - strand, within EX28DRAFT_0949 at 950.169 kb on - strand, within EX28DRAFT_0949 at 950.187 kb on - strand, within EX28DRAFT_0949 at 950.187 kb on - strand, within EX28DRAFT_0949 at 950.391 kb on + strand, within EX28DRAFT_0949 at 950.392 kb on - strand, within EX28DRAFT_0949 at 950.392 kb on - strand, within EX28DRAFT_0949 at 950.409 kb on + strand, within EX28DRAFT_0949 at 950.410 kb on - strand, within EX28DRAFT_0949 at 950.454 kb on + strand, within EX28DRAFT_0949 at 950.540 kb on + strand, within EX28DRAFT_0949 at 950.540 kb on + strand, within EX28DRAFT_0949 at 950.606 kb on + strand at 950.621 kb on + strand at 950.763 kb on + strand at 950.763 kb on + strand at 950.764 kb on - strand at 950.764 kb on - strand at 950.785 kb on + strand at 950.786 kb on - strand at 950.790 kb on + strand at 950.791 kb on - strand at 950.849 kb on + strand at 950.850 kb on - strand at 950.853 kb on - strand at 951.553 kb on + strand at 951.553 kb on + strand at 951.553 kb on + strand at 951.553 kb on + strand at 951.553 kb on + strand at 951.554 kb on - strand at 951.554 kb on - strand at 951.554 kb on - strand at 951.554 kb on - strand at 951.555 kb on + strand at 951.555 kb on + strand at 951.555 kb on + strand at 951.556 kb on - strand at 951.582 kb on + strand at 951.609 kb on - strand at 951.609 kb on - strand at 951.692 kb on + strand, within EX28DRAFT_0951 at 951.692 kb on + strand, within EX28DRAFT_0951 at 951.746 kb on + strand, within EX28DRAFT_0951 at 951.747 kb on - strand, within EX28DRAFT_0951 at 951.747 kb on - strand, within EX28DRAFT_0951 at 951.755 kb on + strand, within EX28DRAFT_0951 at 951.803 kb on + strand, within EX28DRAFT_0951
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 947,166 - -0.2 947,181 + +0.0 947,181 + -0.4 947,182 - +0.8 947,183 + +0.2 947,184 - -0.9 947,184 - -1.1 947,184 - -0.5 947,184 - -0.3 947,214 - +0.6 947,216 - -1.3 947,281 - +0.0 947,328 - -0.1 947,559 - -1.1 947,567 + -1.7 947,571 + -1.5 947,572 - -2.6 947,643 + EX28DRAFT_0948 0.26 +0.3 947,703 + EX28DRAFT_0948 0.70 -1.7 947,745 + -0.5 947,769 + -2.1 947,827 - -0.4 947,841 - -0.2 947,861 + -0.5 947,861 + +1.0 947,886 + -0.4 947,905 + +2.2 948,035 - -1.0 948,089 + +1.6 948,089 + -1.4 948,140 + +0.3 948,140 + +0.9 948,141 - -1.3 948,141 - -1.0 948,154 + +1.3 948,168 - -0.2 948,204 + +0.9 948,205 - -1.3 948,207 + +0.8 948,479 + EX28DRAFT_0949 0.13 -0.6 948,609 + EX28DRAFT_0949 0.17 -1.8 948,610 - EX28DRAFT_0949 0.18 -1.2 948,674 + EX28DRAFT_0949 0.20 -0.2 948,782 + EX28DRAFT_0949 0.24 -0.8 949,069 - EX28DRAFT_0949 0.35 -1.6 949,116 + EX28DRAFT_0949 0.36 -0.3 949,116 + EX28DRAFT_0949 0.36 -1.4 949,117 - EX28DRAFT_0949 0.36 -0.9 949,168 - EX28DRAFT_0949 0.38 +0.8 949,168 - EX28DRAFT_0949 0.38 -0.6 949,168 - EX28DRAFT_0949 0.38 -0.2 949,169 + EX28DRAFT_0949 0.38 -0.6 949,517 - EX28DRAFT_0949 0.51 -2.4 949,643 + EX28DRAFT_0949 0.56 -3.5 949,653 - EX28DRAFT_0949 0.57 -0.4 949,717 + EX28DRAFT_0949 0.59 +1.4 949,717 + EX28DRAFT_0949 0.59 -1.0 949,812 + EX28DRAFT_0949 0.62 -1.4 949,835 + EX28DRAFT_0949 0.63 +1.3 949,836 - EX28DRAFT_0949 0.63 -1.0 949,888 - EX28DRAFT_0949 0.65 -1.4 949,898 + EX28DRAFT_0949 0.66 +1.6 949,899 - EX28DRAFT_0949 0.66 -0.9 950,028 - EX28DRAFT_0949 0.71 -0.3 950,031 + EX28DRAFT_0949 0.71 +1.6 950,032 - EX28DRAFT_0949 0.71 -1.2 950,032 - EX28DRAFT_0949 0.71 +2.2 950,032 - EX28DRAFT_0949 0.71 -1.6 950,055 + EX28DRAFT_0949 0.72 -0.2 950,055 + EX28DRAFT_0949 0.72 -1.2 950,055 + EX28DRAFT_0949 0.72 -0.6 950,056 - EX28DRAFT_0949 0.72 +1.0 950,056 - EX28DRAFT_0949 0.72 -0.5 950,058 - EX28DRAFT_0949 0.72 -0.6 950,132 - EX28DRAFT_0949 0.74 +1.0 950,168 + EX28DRAFT_0949 0.76 -0.4 950,168 + EX28DRAFT_0949 0.76 -0.4 950,169 - EX28DRAFT_0949 0.76 -0.4 950,169 - EX28DRAFT_0949 0.76 -1.8 950,169 - EX28DRAFT_0949 0.76 +0.5 950,187 - EX28DRAFT_0949 0.76 -0.5 950,187 - EX28DRAFT_0949 0.76 -2.7 950,391 + EX28DRAFT_0949 0.84 +0.5 950,392 - EX28DRAFT_0949 0.84 -1.1 950,392 - EX28DRAFT_0949 0.84 +0.9 950,409 + EX28DRAFT_0949 0.85 -0.9 950,410 - EX28DRAFT_0949 0.85 -1.2 950,454 + EX28DRAFT_0949 0.86 +0.3 950,540 + EX28DRAFT_0949 0.90 +0.7 950,540 + EX28DRAFT_0949 0.90 -0.1 950,606 + -0.3 950,621 + -0.3 950,763 + -0.6 950,763 + +0.9 950,764 - -0.1 950,764 - +0.8 950,785 + +0.4 950,786 - +0.0 950,790 + +1.3 950,791 - +0.2 950,849 + +3.2 950,850 - -0.9 950,853 - -1.4 951,553 + -1.7 951,553 + -0.2 951,553 + +0.2 951,553 + -1.7 951,553 + +4.2 951,554 - -1.4 951,554 - +0.1 951,554 - +1.9 951,554 - -1.8 951,555 + +0.6 951,555 + -0.2 951,555 + -0.3 951,556 - -0.5 951,582 + -1.4 951,609 - -1.3 951,609 - -0.1 951,692 + EX28DRAFT_0951 0.10 -0.3 951,692 + EX28DRAFT_0951 0.10 -0.5 951,746 + EX28DRAFT_0951 0.17 -1.6 951,747 - EX28DRAFT_0951 0.17 -1.3 951,747 - EX28DRAFT_0951 0.17 +0.6 951,755 + EX28DRAFT_0951 0.18 +0.3 951,803 + EX28DRAFT_0951 0.24 -0.1
Or see this region's nucleotide sequence