Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0930

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0927 and EX28DRAFT_0928 are separated by 46 nucleotidesEX28DRAFT_0928 and EX28DRAFT_0929 are separated by 122 nucleotidesEX28DRAFT_0929 and EX28DRAFT_0930 overlap by 4 nucleotidesEX28DRAFT_0930 and EX28DRAFT_0931 are separated by 620 nucleotides EX28DRAFT_0927: EX28DRAFT_0927 - Outer membrane protein W, at 926,708 to 927,340 _0927 EX28DRAFT_0928: EX28DRAFT_0928 - hypothetical protein, at 927,387 to 927,728 _0928 EX28DRAFT_0929: EX28DRAFT_0929 - Predicted redox protein, regulator of disulfide bond formation, at 927,851 to 928,084 _0929 EX28DRAFT_0930: EX28DRAFT_0930 - Predicted transporter component, at 928,081 to 929,292 _0930 EX28DRAFT_0931: EX28DRAFT_0931 - Response regulator, at 929,913 to 930,548 _0931 Position (kb) 928 929 930Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 927.231 kb on - strand, within EX28DRAFT_0927at 927.252 kb on + strand, within EX28DRAFT_0927at 927.252 kb on + strand, within EX28DRAFT_0927at 927.289 kb on + strandat 927.290 kb on - strandat 927.309 kb on + strandat 927.309 kb on + strandat 927.313 kb on + strandat 927.313 kb on + strandat 927.314 kb on - strandat 927.314 kb on - strandat 927.454 kb on + strand, within EX28DRAFT_0928at 927.455 kb on - strand, within EX28DRAFT_0928at 927.455 kb on - strand, within EX28DRAFT_0928at 927.455 kb on - strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.456 kb on + strand, within EX28DRAFT_0928at 927.457 kb on - strand, within EX28DRAFT_0928at 927.457 kb on - strand, within EX28DRAFT_0928at 927.461 kb on - strand, within EX28DRAFT_0928at 927.461 kb on - strand, within EX28DRAFT_0928at 927.461 kb on - strand, within EX28DRAFT_0928at 927.595 kb on + strand, within EX28DRAFT_0928at 927.638 kb on + strand, within EX28DRAFT_0928at 927.639 kb on - strand, within EX28DRAFT_0928at 927.721 kb on + strandat 927.722 kb on - strandat 927.770 kb on - strandat 928.111 kb on - strandat 928.182 kb on - strandat 928.182 kb on - strandat 928.352 kb on + strand, within EX28DRAFT_0930at 928.425 kb on + strand, within EX28DRAFT_0930at 928.425 kb on + strand, within EX28DRAFT_0930at 928.470 kb on - strand, within EX28DRAFT_0930at 928.479 kb on + strand, within EX28DRAFT_0930at 928.513 kb on - strand, within EX28DRAFT_0930at 928.566 kb on + strand, within EX28DRAFT_0930at 928.814 kb on + strand, within EX28DRAFT_0930at 928.815 kb on - strand, within EX28DRAFT_0930at 929.115 kb on + strand, within EX28DRAFT_0930at 929.134 kb on + strand, within EX28DRAFT_0930at 929.134 kb on + strand, within EX28DRAFT_0930at 929.201 kb on + strandat 929.202 kb on - strandat 929.202 kb on - strandat 929.202 kb on - strandat 929.202 kb on - strandat 929.204 kb on + strandat 929.205 kb on - strandat 929.208 kb on + strandat 929.265 kb on - strandat 929.297 kb on - strandat 929.297 kb on - strandat 929.343 kb on - strandat 929.344 kb on + strandat 929.345 kb on - strandat 929.485 kb on - strandat 929.486 kb on + strandat 929.486 kb on + strandat 929.590 kb on - strandat 929.603 kb on + strandat 929.649 kb on + strandat 929.650 kb on - strandat 929.680 kb on - strandat 929.709 kb on - strandat 929.709 kb on - strandat 929.811 kb on + strandat 929.827 kb on + strandat 929.878 kb on + strandat 929.883 kb on - strandat 929.955 kb on - strandat 929.962 kb on - strandat 930.061 kb on + strand, within EX28DRAFT_0931at 930.062 kb on - strand, within EX28DRAFT_0931at 930.062 kb on - strand, within EX28DRAFT_0931at 930.064 kb on + strand, within EX28DRAFT_0931at 930.107 kb on - strand, within EX28DRAFT_0931at 930.181 kb on + strand, within EX28DRAFT_0931at 930.242 kb on + strand, within EX28DRAFT_0931

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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927,231 - EX28DRAFT_0927 0.83 +0.0
927,252 + EX28DRAFT_0927 0.86 +0.3
927,252 + EX28DRAFT_0927 0.86 -1.9
927,289 + -0.1
927,290 - -0.2
927,309 + +0.0
927,309 + -0.8
927,313 + -0.7
927,313 + -0.3
927,314 - -0.5
927,314 - +0.8
927,454 + EX28DRAFT_0928 0.20 +0.8
927,455 - EX28DRAFT_0928 0.20 -0.5
927,455 - EX28DRAFT_0928 0.20 -0.3
927,455 - EX28DRAFT_0928 0.20 +4.4
927,456 + EX28DRAFT_0928 0.20 +0.5
927,456 + EX28DRAFT_0928 0.20 -4.1
927,456 + EX28DRAFT_0928 0.20 +0.7
927,456 + EX28DRAFT_0928 0.20 -0.3
927,456 + EX28DRAFT_0928 0.20 +0.6
927,457 - EX28DRAFT_0928 0.20 -0.8
927,457 - EX28DRAFT_0928 0.20 +1.6
927,461 - EX28DRAFT_0928 0.22 +0.6
927,461 - EX28DRAFT_0928 0.22 -1.0
927,461 - EX28DRAFT_0928 0.22 +0.0
927,595 + EX28DRAFT_0928 0.61 +0.4
927,638 + EX28DRAFT_0928 0.73 -2.1
927,639 - EX28DRAFT_0928 0.74 -1.7
927,721 + -0.2
927,722 - -0.3
927,770 - +1.3
928,111 - +0.6
928,182 - +3.2
928,182 - +0.4
928,352 + EX28DRAFT_0930 0.22 -2.3
928,425 + EX28DRAFT_0930 0.28 +4.1
928,425 + EX28DRAFT_0930 0.28 -3.3
928,470 - EX28DRAFT_0930 0.32 +0.3
928,479 + EX28DRAFT_0930 0.33 +0.6
928,513 - EX28DRAFT_0930 0.36 +0.0
928,566 + EX28DRAFT_0930 0.40 -0.4
928,814 + EX28DRAFT_0930 0.60 -0.1
928,815 - EX28DRAFT_0930 0.61 +1.6
929,115 + EX28DRAFT_0930 0.85 +1.6
929,134 + EX28DRAFT_0930 0.87 +0.9
929,134 + EX28DRAFT_0930 0.87 -1.2
929,201 + -0.2
929,202 - -2.6
929,202 - +1.3
929,202 - +1.1
929,202 - -1.4
929,204 + +0.4
929,205 - -0.5
929,208 + -2.1
929,265 - -0.7
929,297 - -0.1
929,297 - +0.0
929,343 - +0.7
929,344 + +1.6
929,345 - -0.1
929,485 - +0.0
929,486 + +0.3
929,486 + -1.0
929,590 - +0.0
929,603 + -1.6
929,649 + +0.6
929,650 - +0.6
929,680 - +0.0
929,709 - -1.6
929,709 - +1.0
929,811 + -0.7
929,827 + -0.9
929,878 + -0.1
929,883 - +0.3
929,955 - -2.8
929,962 - -0.7
930,061 + EX28DRAFT_0931 0.23 -2.7
930,062 - EX28DRAFT_0931 0.23 +1.4
930,062 - EX28DRAFT_0931 0.23 +0.3
930,064 + EX28DRAFT_0931 0.24 -1.1
930,107 - EX28DRAFT_0931 0.31 +0.1
930,181 + EX28DRAFT_0931 0.42 -0.4
930,242 + EX28DRAFT_0931 0.52 +0.2

Or see this region's nucleotide sequence