Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0916

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0915 and EX28DRAFT_0916 are separated by 12 nucleotidesEX28DRAFT_0916 and EX28DRAFT_0917 overlap by 4 nucleotides EX28DRAFT_0915: EX28DRAFT_0915 - phage tail tape measure protein, TP901 family, core region, at 916,095 to 918,542 _0915 EX28DRAFT_0916: EX28DRAFT_0916 - Phage protein U, at 918,555 to 919,019 _0916 EX28DRAFT_0917: EX28DRAFT_0917 - Phage protein D, at 919,016 to 920,185 _0917 Position (kb) 918 919 920Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 917.577 kb on + strand, within EX28DRAFT_0915at 917.577 kb on + strand, within EX28DRAFT_0915at 917.577 kb on + strand, within EX28DRAFT_0915at 917.628 kb on - strand, within EX28DRAFT_0915at 917.653 kb on - strand, within EX28DRAFT_0915at 917.653 kb on - strand, within EX28DRAFT_0915at 917.687 kb on + strand, within EX28DRAFT_0915at 917.688 kb on - strand, within EX28DRAFT_0915at 917.713 kb on + strand, within EX28DRAFT_0915at 917.716 kb on + strand, within EX28DRAFT_0915at 917.716 kb on + strand, within EX28DRAFT_0915at 917.768 kb on - strand, within EX28DRAFT_0915at 917.846 kb on + strand, within EX28DRAFT_0915at 917.876 kb on + strand, within EX28DRAFT_0915at 918.155 kb on + strand, within EX28DRAFT_0915at 918.156 kb on - strand, within EX28DRAFT_0915at 918.161 kb on - strand, within EX28DRAFT_0915at 918.200 kb on + strand, within EX28DRAFT_0915at 918.321 kb on + strandat 918.321 kb on + strandat 918.322 kb on - strandat 918.322 kb on - strandat 918.322 kb on - strandat 918.322 kb on - strandat 918.323 kb on + strandat 918.342 kb on + strandat 918.343 kb on - strandat 918.387 kb on - strandat 918.393 kb on + strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.397 kb on + strandat 918.417 kb on + strandat 918.417 kb on + strandat 918.419 kb on + strandat 918.419 kb on + strandat 918.420 kb on - strandat 918.527 kb on + strandat 918.559 kb on + strandat 918.612 kb on - strand, within EX28DRAFT_0916at 918.679 kb on - strand, within EX28DRAFT_0916at 918.827 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.831 kb on + strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.832 kb on - strand, within EX28DRAFT_0916at 918.946 kb on - strand, within EX28DRAFT_0916at 919.197 kb on + strand, within EX28DRAFT_0917at 919.197 kb on + strand, within EX28DRAFT_0917at 919.312 kb on + strand, within EX28DRAFT_0917at 919.351 kb on + strand, within EX28DRAFT_0917at 919.430 kb on - strand, within EX28DRAFT_0917at 919.685 kb on + strand, within EX28DRAFT_0917at 919.686 kb on - strand, within EX28DRAFT_0917at 919.686 kb on - strand, within EX28DRAFT_0917at 919.686 kb on - strand, within EX28DRAFT_0917at 919.759 kb on + strand, within EX28DRAFT_0917at 919.760 kb on - strand, within EX28DRAFT_0917at 919.825 kb on + strand, within EX28DRAFT_0917at 919.907 kb on + strand, within EX28DRAFT_0917at 919.908 kb on - strand, within EX28DRAFT_0917at 920.014 kb on - strand, within EX28DRAFT_0917

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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917,577 + EX28DRAFT_0915 0.61 +1.6
917,577 + EX28DRAFT_0915 0.61 -0.3
917,577 + EX28DRAFT_0915 0.61 -1.8
917,628 - EX28DRAFT_0915 0.63 +1.4
917,653 - EX28DRAFT_0915 0.64 -1.2
917,653 - EX28DRAFT_0915 0.64 +0.8
917,687 + EX28DRAFT_0915 0.65 +0.6
917,688 - EX28DRAFT_0915 0.65 -0.4
917,713 + EX28DRAFT_0915 0.66 +0.5
917,716 + EX28DRAFT_0915 0.66 -0.6
917,716 + EX28DRAFT_0915 0.66 +1.8
917,768 - EX28DRAFT_0915 0.68 +1.1
917,846 + EX28DRAFT_0915 0.72 -0.1
917,876 + EX28DRAFT_0915 0.73 -1.2
918,155 + EX28DRAFT_0915 0.84 +0.9
918,156 - EX28DRAFT_0915 0.84 -0.4
918,161 - EX28DRAFT_0915 0.84 -1.5
918,200 + EX28DRAFT_0915 0.86 -0.7
918,321 + +0.9
918,321 + +0.4
918,322 - -2.0
918,322 - +0.7
918,322 - +3.4
918,322 - -0.3
918,323 + -1.4
918,342 + -0.1
918,343 - +0.6
918,387 - +1.0
918,393 + +0.0
918,394 - +0.3
918,394 - +0.1
918,394 - -1.0
918,394 - +0.3
918,394 - -0.4
918,397 + +1.3
918,417 + -0.2
918,417 + +1.4
918,419 + -0.2
918,419 + +5.4
918,420 - +0.2
918,527 + -0.1
918,559 + -1.4
918,612 - EX28DRAFT_0916 0.12 +0.4
918,679 - EX28DRAFT_0916 0.27 +0.0
918,827 + EX28DRAFT_0916 0.58 -1.0
918,831 + EX28DRAFT_0916 0.59 -0.0
918,831 + EX28DRAFT_0916 0.59 -1.0
918,831 + EX28DRAFT_0916 0.59 +1.0
918,831 + EX28DRAFT_0916 0.59 -1.5
918,831 + EX28DRAFT_0916 0.59 +0.0
918,831 + EX28DRAFT_0916 0.59 +0.5
918,831 + EX28DRAFT_0916 0.59 +1.4
918,831 + EX28DRAFT_0916 0.59 -0.8
918,831 + EX28DRAFT_0916 0.59 +0.7
918,831 + EX28DRAFT_0916 0.59 -0.0
918,831 + EX28DRAFT_0916 0.59 +0.8
918,832 - EX28DRAFT_0916 0.60 +0.3
918,832 - EX28DRAFT_0916 0.60 +0.2
918,832 - EX28DRAFT_0916 0.60 +1.8
918,832 - EX28DRAFT_0916 0.60 +1.0
918,832 - EX28DRAFT_0916 0.60 -0.8
918,832 - EX28DRAFT_0916 0.60 -0.8
918,946 - EX28DRAFT_0916 0.84 -0.2
919,197 + EX28DRAFT_0917 0.15 -1.6
919,197 + EX28DRAFT_0917 0.15 +0.6
919,312 + EX28DRAFT_0917 0.25 -0.2
919,351 + EX28DRAFT_0917 0.29 -0.8
919,430 - EX28DRAFT_0917 0.35 -1.1
919,685 + EX28DRAFT_0917 0.57 +0.0
919,686 - EX28DRAFT_0917 0.57 -0.7
919,686 - EX28DRAFT_0917 0.57 +1.4
919,686 - EX28DRAFT_0917 0.57 +0.1
919,759 + EX28DRAFT_0917 0.64 +0.1
919,760 - EX28DRAFT_0917 0.64 +0.0
919,825 + EX28DRAFT_0917 0.69 -1.4
919,907 + EX28DRAFT_0917 0.76 +0.2
919,908 - EX28DRAFT_0917 0.76 +2.8
920,014 - EX28DRAFT_0917 0.85 +0.3

Or see this region's nucleotide sequence