Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0909

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0907 and EX28DRAFT_0908 overlap by 8 nucleotidesEX28DRAFT_0908 and EX28DRAFT_0909 are separated by 7 nucleotidesEX28DRAFT_0909 and EX28DRAFT_0910 overlap by 1 nucleotidesEX28DRAFT_0910 and EX28DRAFT_0911 are separated by 154 nucleotides EX28DRAFT_0907: EX28DRAFT_0907 - Phage-related baseplate assembly protein, at 909,787 to 910,695 _0907 EX28DRAFT_0908: EX28DRAFT_0908 - phage tail protein, P2 protein I family, at 910,688 to 911,221 _0908 EX28DRAFT_0909: EX28DRAFT_0909 - Phage-related tail fibre protein, at 911,229 to 913,094 _0909 EX28DRAFT_0910: EX28DRAFT_0910 - Caudovirales tail fibre assembly protein, at 913,094 to 913,702 _0910 EX28DRAFT_0911: EX28DRAFT_0911 - Phage tail sheath protein FI, at 913,857 to 915,050 _0911 Position (kb) 911 912 913 914Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 910.429 kb on + strand, within EX28DRAFT_0907at 910.432 kb on - strand, within EX28DRAFT_0907at 910.513 kb on + strand, within EX28DRAFT_0907at 910.513 kb on + strand, within EX28DRAFT_0907at 910.514 kb on - strand, within EX28DRAFT_0907at 910.514 kb on - strand, within EX28DRAFT_0907at 910.514 kb on - strand, within EX28DRAFT_0907at 910.514 kb on - strand, within EX28DRAFT_0907at 910.974 kb on - strand, within EX28DRAFT_0908at 911.076 kb on - strand, within EX28DRAFT_0908at 911.141 kb on - strand, within EX28DRAFT_0908at 911.184 kb on - strandat 911.216 kb on - strandat 911.236 kb on + strandat 911.237 kb on - strandat 911.243 kb on + strandat 911.274 kb on - strandat 911.446 kb on - strand, within EX28DRAFT_0909at 911.511 kb on + strand, within EX28DRAFT_0909at 911.511 kb on + strand, within EX28DRAFT_0909at 911.606 kb on + strand, within EX28DRAFT_0909at 911.607 kb on - strand, within EX28DRAFT_0909at 911.620 kb on + strand, within EX28DRAFT_0909at 911.621 kb on - strand, within EX28DRAFT_0909at 911.682 kb on + strand, within EX28DRAFT_0909at 911.683 kb on - strand, within EX28DRAFT_0909at 911.693 kb on + strand, within EX28DRAFT_0909at 911.765 kb on - strand, within EX28DRAFT_0909at 911.820 kb on - strand, within EX28DRAFT_0909at 911.851 kb on - strand, within EX28DRAFT_0909at 911.851 kb on - strand, within EX28DRAFT_0909at 911.961 kb on + strand, within EX28DRAFT_0909at 911.961 kb on + strand, within EX28DRAFT_0909at 911.962 kb on - strand, within EX28DRAFT_0909at 911.982 kb on + strand, within EX28DRAFT_0909at 911.984 kb on + strand, within EX28DRAFT_0909at 912.032 kb on + strand, within EX28DRAFT_0909at 912.075 kb on - strand, within EX28DRAFT_0909at 912.252 kb on + strand, within EX28DRAFT_0909at 912.291 kb on + strand, within EX28DRAFT_0909at 912.325 kb on - strand, within EX28DRAFT_0909at 912.326 kb on + strand, within EX28DRAFT_0909at 912.326 kb on + strand, within EX28DRAFT_0909at 912.326 kb on + strand, within EX28DRAFT_0909at 912.358 kb on + strand, within EX28DRAFT_0909at 912.360 kb on + strand, within EX28DRAFT_0909at 912.489 kb on + strand, within EX28DRAFT_0909at 912.542 kb on + strand, within EX28DRAFT_0909at 912.555 kb on + strand, within EX28DRAFT_0909at 912.563 kb on - strand, within EX28DRAFT_0909at 912.708 kb on - strand, within EX28DRAFT_0909at 912.757 kb on + strand, within EX28DRAFT_0909at 912.801 kb on + strand, within EX28DRAFT_0909at 913.055 kb on + strandat 913.154 kb on - strandat 913.443 kb on + strand, within EX28DRAFT_0910at 913.477 kb on + strand, within EX28DRAFT_0910at 913.546 kb on + strand, within EX28DRAFT_0910at 913.763 kb on + strandat 913.764 kb on - strandat 913.764 kb on - strandat 913.808 kb on + strandat 913.867 kb on - strandat 914.030 kb on + strand, within EX28DRAFT_0911

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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910,429 + EX28DRAFT_0907 0.71 -0.2
910,432 - EX28DRAFT_0907 0.71 -3.5
910,513 + EX28DRAFT_0907 0.80 -0.7
910,513 + EX28DRAFT_0907 0.80 -0.5
910,514 - EX28DRAFT_0907 0.80 +0.1
910,514 - EX28DRAFT_0907 0.80 -0.4
910,514 - EX28DRAFT_0907 0.80 +1.5
910,514 - EX28DRAFT_0907 0.80 +2.4
910,974 - EX28DRAFT_0908 0.54 -2.1
911,076 - EX28DRAFT_0908 0.73 +1.4
911,141 - EX28DRAFT_0908 0.85 -1.3
911,184 - -0.1
911,216 - -1.0
911,236 + -0.2
911,237 - -0.5
911,243 + +3.6
911,274 - -0.6
911,446 - EX28DRAFT_0909 0.12 +1.2
911,511 + EX28DRAFT_0909 0.15 -1.0
911,511 + EX28DRAFT_0909 0.15 +1.6
911,606 + EX28DRAFT_0909 0.20 -2.9
911,607 - EX28DRAFT_0909 0.20 +1.7
911,620 + EX28DRAFT_0909 0.21 +0.6
911,621 - EX28DRAFT_0909 0.21 +0.2
911,682 + EX28DRAFT_0909 0.24 +0.5
911,683 - EX28DRAFT_0909 0.24 -2.1
911,693 + EX28DRAFT_0909 0.25 +1.0
911,765 - EX28DRAFT_0909 0.29 -0.1
911,820 - EX28DRAFT_0909 0.32 -0.5
911,851 - EX28DRAFT_0909 0.33 -2.8
911,851 - EX28DRAFT_0909 0.33 +2.6
911,961 + EX28DRAFT_0909 0.39 +0.2
911,961 + EX28DRAFT_0909 0.39 -0.5
911,962 - EX28DRAFT_0909 0.39 +0.4
911,982 + EX28DRAFT_0909 0.40 +0.9
911,984 + EX28DRAFT_0909 0.40 -1.7
912,032 + EX28DRAFT_0909 0.43 -0.8
912,075 - EX28DRAFT_0909 0.45 +0.1
912,252 + EX28DRAFT_0909 0.55 -0.1
912,291 + EX28DRAFT_0909 0.57 +0.7
912,325 - EX28DRAFT_0909 0.59 +3.6
912,326 + EX28DRAFT_0909 0.59 +0.6
912,326 + EX28DRAFT_0909 0.59 +0.1
912,326 + EX28DRAFT_0909 0.59 +0.8
912,358 + EX28DRAFT_0909 0.61 +0.4
912,360 + EX28DRAFT_0909 0.61 -0.5
912,489 + EX28DRAFT_0909 0.68 -0.6
912,542 + EX28DRAFT_0909 0.70 -0.3
912,555 + EX28DRAFT_0909 0.71 +2.6
912,563 - EX28DRAFT_0909 0.71 -0.3
912,708 - EX28DRAFT_0909 0.79 +1.6
912,757 + EX28DRAFT_0909 0.82 +0.6
912,801 + EX28DRAFT_0909 0.84 +0.5
913,055 + +0.3
913,154 - -1.2
913,443 + EX28DRAFT_0910 0.57 -0.0
913,477 + EX28DRAFT_0910 0.63 -1.6
913,546 + EX28DRAFT_0910 0.74 -1.3
913,763 + +0.6
913,764 - -0.4
913,764 - +0.6
913,808 + +0.2
913,867 - +1.0
914,030 + EX28DRAFT_0911 0.14 -0.1

Or see this region's nucleotide sequence