Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0891 and EX28DRAFT_0892 are separated by 1 nucleotides EX28DRAFT_0892 and EX28DRAFT_0893 are separated by 166 nucleotides
EX28DRAFT_0891: EX28DRAFT_0891 - phage portal protein, PBSX family, at 898,954 to 899,979
_0891
EX28DRAFT_0892: EX28DRAFT_0892 - Uncharacterized conserved protein, at 899,981 to 901,750
_0892
EX28DRAFT_0893: EX28DRAFT_0893 - Phage capsid scaffolding protein (GPO) serine peptidase, at 901,917 to 902,771
_0893
Position (kb) 899
900
901
902 Strain fitness (log2 ratio) -2
-1
0
1
2 at 899.354 kb on + strand, within EX28DRAFT_0891 at 899.354 kb on + strand, within EX28DRAFT_0891 at 899.354 kb on + strand, within EX28DRAFT_0891 at 899.355 kb on - strand, within EX28DRAFT_0891 at 899.388 kb on - strand, within EX28DRAFT_0891 at 899.390 kb on + strand, within EX28DRAFT_0891 at 899.390 kb on + strand, within EX28DRAFT_0891 at 899.391 kb on - strand, within EX28DRAFT_0891 at 899.391 kb on - strand, within EX28DRAFT_0891 at 899.391 kb on - strand, within EX28DRAFT_0891 at 899.436 kb on + strand, within EX28DRAFT_0891 at 899.549 kb on + strand, within EX28DRAFT_0891 at 899.585 kb on + strand, within EX28DRAFT_0891 at 899.586 kb on - strand, within EX28DRAFT_0891 at 899.669 kb on + strand, within EX28DRAFT_0891 at 899.826 kb on - strand, within EX28DRAFT_0891 at 899.982 kb on + strand at 899.982 kb on + strand at 899.983 kb on - strand at 899.986 kb on + strand at 899.987 kb on - strand at 899.987 kb on - strand at 900.109 kb on - strand at 900.154 kb on + strand at 900.154 kb on + strand at 900.154 kb on + strand at 900.155 kb on - strand at 900.341 kb on - strand, within EX28DRAFT_0892 at 900.342 kb on + strand, within EX28DRAFT_0892 at 900.354 kb on + strand, within EX28DRAFT_0892 at 900.354 kb on + strand, within EX28DRAFT_0892 at 900.355 kb on - strand, within EX28DRAFT_0892 at 900.508 kb on - strand, within EX28DRAFT_0892 at 900.629 kb on - strand, within EX28DRAFT_0892 at 900.649 kb on + strand, within EX28DRAFT_0892 at 900.649 kb on + strand, within EX28DRAFT_0892 at 900.650 kb on - strand, within EX28DRAFT_0892 at 900.910 kb on - strand, within EX28DRAFT_0892 at 900.999 kb on + strand, within EX28DRAFT_0892 at 900.999 kb on + strand, within EX28DRAFT_0892 at 901.132 kb on - strand, within EX28DRAFT_0892 at 901.132 kb on - strand, within EX28DRAFT_0892 at 901.135 kb on + strand, within EX28DRAFT_0892 at 901.135 kb on + strand, within EX28DRAFT_0892 at 901.136 kb on - strand, within EX28DRAFT_0892 at 901.146 kb on + strand, within EX28DRAFT_0892 at 901.146 kb on + strand, within EX28DRAFT_0892 at 901.147 kb on - strand, within EX28DRAFT_0892 at 901.159 kb on + strand, within EX28DRAFT_0892 at 901.291 kb on + strand, within EX28DRAFT_0892 at 901.291 kb on + strand, within EX28DRAFT_0892 at 901.368 kb on + strand, within EX28DRAFT_0892 at 901.417 kb on + strand, within EX28DRAFT_0892 at 901.417 kb on + strand, within EX28DRAFT_0892 at 901.550 kb on - strand, within EX28DRAFT_0892 at 901.689 kb on + strand at 901.822 kb on + strand at 901.831 kb on + strand at 901.877 kb on + strand at 902.061 kb on - strand, within EX28DRAFT_0893 at 902.061 kb on - strand, within EX28DRAFT_0893 at 902.169 kb on + strand, within EX28DRAFT_0893 at 902.170 kb on - strand, within EX28DRAFT_0893 at 902.329 kb on - strand, within EX28DRAFT_0893 at 902.624 kb on + strand, within EX28DRAFT_0893
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 899,354 + EX28DRAFT_0891 0.39 +0.2 899,354 + EX28DRAFT_0891 0.39 -0.4 899,354 + EX28DRAFT_0891 0.39 +0.3 899,355 - EX28DRAFT_0891 0.39 +0.3 899,388 - EX28DRAFT_0891 0.42 +1.5 899,390 + EX28DRAFT_0891 0.42 -1.2 899,390 + EX28DRAFT_0891 0.42 +1.1 899,391 - EX28DRAFT_0891 0.43 +0.3 899,391 - EX28DRAFT_0891 0.43 +1.4 899,391 - EX28DRAFT_0891 0.43 +0.5 899,436 + EX28DRAFT_0891 0.47 -0.4 899,549 + EX28DRAFT_0891 0.58 -1.2 899,585 + EX28DRAFT_0891 0.62 +0.3 899,586 - EX28DRAFT_0891 0.62 -1.3 899,669 + EX28DRAFT_0891 0.70 -2.5 899,826 - EX28DRAFT_0891 0.85 -1.3 899,982 + -1.4 899,982 + +1.0 899,983 - -2.2 899,986 + +1.1 899,987 - -0.3 899,987 - +0.9 900,109 - +0.1 900,154 + -0.2 900,154 + -0.2 900,154 + +1.6 900,155 - -0.4 900,341 - EX28DRAFT_0892 0.20 +1.9 900,342 + EX28DRAFT_0892 0.20 -1.7 900,354 + EX28DRAFT_0892 0.21 +2.0 900,354 + EX28DRAFT_0892 0.21 -0.4 900,355 - EX28DRAFT_0892 0.21 +0.6 900,508 - EX28DRAFT_0892 0.30 +0.2 900,629 - EX28DRAFT_0892 0.37 -0.7 900,649 + EX28DRAFT_0892 0.38 +0.9 900,649 + EX28DRAFT_0892 0.38 -1.2 900,650 - EX28DRAFT_0892 0.38 -0.6 900,910 - EX28DRAFT_0892 0.52 +0.1 900,999 + EX28DRAFT_0892 0.58 +0.2 900,999 + EX28DRAFT_0892 0.58 +0.9 901,132 - EX28DRAFT_0892 0.65 +1.6 901,132 - EX28DRAFT_0892 0.65 +0.3 901,135 + EX28DRAFT_0892 0.65 -1.4 901,135 + EX28DRAFT_0892 0.65 +0.7 901,136 - EX28DRAFT_0892 0.65 -0.6 901,146 + EX28DRAFT_0892 0.66 +0.0 901,146 + EX28DRAFT_0892 0.66 -0.2 901,147 - EX28DRAFT_0892 0.66 +1.6 901,159 + EX28DRAFT_0892 0.67 +0.9 901,291 + EX28DRAFT_0892 0.74 -0.4 901,291 + EX28DRAFT_0892 0.74 -0.1 901,368 + EX28DRAFT_0892 0.78 -0.6 901,417 + EX28DRAFT_0892 0.81 -0.2 901,417 + EX28DRAFT_0892 0.81 +0.3 901,550 - EX28DRAFT_0892 0.89 +0.4 901,689 + +0.5 901,822 + +0.5 901,831 + -0.8 901,877 + +0.8 902,061 - EX28DRAFT_0893 0.17 +0.5 902,061 - EX28DRAFT_0893 0.17 +0.2 902,169 + EX28DRAFT_0893 0.29 +0.3 902,170 - EX28DRAFT_0893 0.30 -0.3 902,329 - EX28DRAFT_0893 0.48 -2.1 902,624 + EX28DRAFT_0893 0.83 +0.6
Or see this region's nucleotide sequence