Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0869 and EX28DRAFT_0870 are separated by 14 nucleotides EX28DRAFT_0870 and EX28DRAFT_0871 are separated by 11 nucleotides
EX28DRAFT_0869: EX28DRAFT_0869 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 882,514 to 883,434
_0869
EX28DRAFT_0870: EX28DRAFT_0870 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 883,449 to 884,357
_0870
EX28DRAFT_0871: EX28DRAFT_0871 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 884,369 to 885,382
_0871
Position (kb) 883
884
885 Strain fitness (log2 ratio) -2
-1
0
1 at 882.483 kb on + strand at 882.484 kb on - strand at 882.484 kb on - strand at 882.484 kb on - strand at 882.486 kb on + strand at 882.486 kb on + strand at 882.487 kb on - strand at 882.488 kb on + strand at 882.488 kb on + strand at 882.488 kb on + strand at 882.489 kb on - strand at 882.561 kb on - strand at 882.564 kb on + strand at 882.564 kb on + strand at 882.701 kb on - strand, within EX28DRAFT_0869 at 882.756 kb on + strand, within EX28DRAFT_0869 at 882.764 kb on - strand, within EX28DRAFT_0869 at 882.888 kb on + strand, within EX28DRAFT_0869 at 882.959 kb on + strand, within EX28DRAFT_0869 at 882.971 kb on + strand, within EX28DRAFT_0869 at 882.972 kb on - strand, within EX28DRAFT_0869 at 883.171 kb on - strand, within EX28DRAFT_0869 at 883.171 kb on - strand, within EX28DRAFT_0869 at 883.171 kb on - strand, within EX28DRAFT_0869 at 883.216 kb on + strand, within EX28DRAFT_0869 at 883.216 kb on + strand, within EX28DRAFT_0869 at 883.216 kb on + strand, within EX28DRAFT_0869 at 883.216 kb on + strand, within EX28DRAFT_0869 at 883.217 kb on - strand, within EX28DRAFT_0869 at 883.507 kb on + strand at 883.635 kb on - strand, within EX28DRAFT_0870 at 883.695 kb on + strand, within EX28DRAFT_0870 at 883.754 kb on + strand, within EX28DRAFT_0870 at 883.992 kb on - strand, within EX28DRAFT_0870 at 884.034 kb on - strand, within EX28DRAFT_0870 at 884.059 kb on + strand, within EX28DRAFT_0870 at 884.122 kb on - strand, within EX28DRAFT_0870 at 884.122 kb on - strand, within EX28DRAFT_0870 at 884.456 kb on - strand at 884.476 kb on + strand, within EX28DRAFT_0871 at 884.477 kb on - strand, within EX28DRAFT_0871 at 884.727 kb on - strand, within EX28DRAFT_0871 at 884.728 kb on + strand, within EX28DRAFT_0871 at 884.851 kb on + strand, within EX28DRAFT_0871 at 884.852 kb on - strand, within EX28DRAFT_0871 at 884.852 kb on - strand, within EX28DRAFT_0871 at 884.884 kb on + strand, within EX28DRAFT_0871 at 884.953 kb on + strand, within EX28DRAFT_0871 at 885.095 kb on + strand, within EX28DRAFT_0871 at 885.140 kb on + strand, within EX28DRAFT_0871 at 885.140 kb on + strand, within EX28DRAFT_0871 at 885.141 kb on - strand, within EX28DRAFT_0871
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 882,483 + -0.2 882,484 - -0.7 882,484 - +0.4 882,484 - +0.2 882,486 + -2.1 882,486 + +0.1 882,487 - -0.9 882,488 + +0.3 882,488 + -1.0 882,488 + +0.2 882,489 - +0.6 882,561 - -0.7 882,564 + -0.2 882,564 + -0.7 882,701 - EX28DRAFT_0869 0.20 -0.3 882,756 + EX28DRAFT_0869 0.26 -0.3 882,764 - EX28DRAFT_0869 0.27 +0.0 882,888 + EX28DRAFT_0869 0.41 +0.1 882,959 + EX28DRAFT_0869 0.48 +0.4 882,971 + EX28DRAFT_0869 0.50 +1.0 882,972 - EX28DRAFT_0869 0.50 -0.8 883,171 - EX28DRAFT_0869 0.71 +1.0 883,171 - EX28DRAFT_0869 0.71 +0.0 883,171 - EX28DRAFT_0869 0.71 -0.9 883,216 + EX28DRAFT_0869 0.76 -0.8 883,216 + EX28DRAFT_0869 0.76 -0.1 883,216 + EX28DRAFT_0869 0.76 -1.7 883,216 + EX28DRAFT_0869 0.76 -0.4 883,217 - EX28DRAFT_0869 0.76 -1.0 883,507 + +0.5 883,635 - EX28DRAFT_0870 0.20 +0.1 883,695 + EX28DRAFT_0870 0.27 +1.4 883,754 + EX28DRAFT_0870 0.34 -1.5 883,992 - EX28DRAFT_0870 0.60 +1.6 884,034 - EX28DRAFT_0870 0.64 +0.0 884,059 + EX28DRAFT_0870 0.67 -0.8 884,122 - EX28DRAFT_0870 0.74 -1.3 884,122 - EX28DRAFT_0870 0.74 -0.9 884,456 - +1.5 884,476 + EX28DRAFT_0871 0.11 -0.2 884,477 - EX28DRAFT_0871 0.11 +0.8 884,727 - EX28DRAFT_0871 0.35 -1.5 884,728 + EX28DRAFT_0871 0.35 +0.7 884,851 + EX28DRAFT_0871 0.48 +0.9 884,852 - EX28DRAFT_0871 0.48 -1.1 884,852 - EX28DRAFT_0871 0.48 -0.3 884,884 + EX28DRAFT_0871 0.51 +1.3 884,953 + EX28DRAFT_0871 0.58 -0.8 885,095 + EX28DRAFT_0871 0.72 -2.4 885,140 + EX28DRAFT_0871 0.76 -0.5 885,140 + EX28DRAFT_0871 0.76 +0.0 885,141 - EX28DRAFT_0871 0.76 -0.2
Or see this region's nucleotide sequence