Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0839 and EX28DRAFT_0840 are separated by 106 nucleotides EX28DRAFT_0840 and EX28DRAFT_0841 are separated by 72 nucleotides EX28DRAFT_0841 and EX28DRAFT_0842 are separated by 228 nucleotides
EX28DRAFT_0839: EX28DRAFT_0839 - Methyl-accepting chemotaxis protein, at 841,639 to 843,423
_0839
EX28DRAFT_0840: EX28DRAFT_0840 - Uncharacterized conserved protein involved in intracellular sulfur reduction, at 843,530 to 843,883
_0840
EX28DRAFT_0841: EX28DRAFT_0841 - ANTAR domain/Nitrate and nitrite sensing, at 843,956 to 845,140
_0841
EX28DRAFT_0842: EX28DRAFT_0842 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 845,369 to 846,616
_0842
Position (kb) 843
844
845
846 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 843.046 kb on + strand, within EX28DRAFT_0839 at 843.047 kb on - strand, within EX28DRAFT_0839 at 843.070 kb on - strand, within EX28DRAFT_0839 at 843.080 kb on + strand, within EX28DRAFT_0839 at 843.080 kb on + strand, within EX28DRAFT_0839 at 843.081 kb on - strand, within EX28DRAFT_0839 at 843.140 kb on + strand, within EX28DRAFT_0839 at 843.141 kb on - strand, within EX28DRAFT_0839 at 843.177 kb on + strand, within EX28DRAFT_0839 at 843.271 kb on - strand at 843.423 kb on + strand at 843.423 kb on + strand at 843.475 kb on - strand at 843.509 kb on + strand at 843.597 kb on - strand, within EX28DRAFT_0840 at 843.706 kb on + strand, within EX28DRAFT_0840 at 843.706 kb on + strand, within EX28DRAFT_0840 at 843.709 kb on - strand, within EX28DRAFT_0840 at 843.709 kb on - strand, within EX28DRAFT_0840 at 843.900 kb on - strand at 843.900 kb on - strand at 843.951 kb on + strand at 843.951 kb on + strand at 843.952 kb on - strand at 843.952 kb on - strand at 844.087 kb on + strand, within EX28DRAFT_0841 at 844.088 kb on - strand, within EX28DRAFT_0841 at 844.092 kb on + strand, within EX28DRAFT_0841 at 844.092 kb on + strand, within EX28DRAFT_0841 at 844.145 kb on + strand, within EX28DRAFT_0841 at 844.146 kb on - strand, within EX28DRAFT_0841 at 844.240 kb on + strand, within EX28DRAFT_0841 at 844.240 kb on + strand, within EX28DRAFT_0841 at 844.240 kb on + strand, within EX28DRAFT_0841 at 844.241 kb on - strand, within EX28DRAFT_0841 at 844.283 kb on - strand, within EX28DRAFT_0841 at 844.349 kb on + strand, within EX28DRAFT_0841 at 844.349 kb on + strand, within EX28DRAFT_0841 at 844.807 kb on + strand, within EX28DRAFT_0841 at 844.807 kb on + strand, within EX28DRAFT_0841 at 844.807 kb on + strand, within EX28DRAFT_0841 at 844.807 kb on + strand, within EX28DRAFT_0841 at 844.811 kb on + strand, within EX28DRAFT_0841 at 844.812 kb on - strand, within EX28DRAFT_0841 at 844.812 kb on - strand, within EX28DRAFT_0841 at 844.826 kb on + strand, within EX28DRAFT_0841 at 844.827 kb on - strand, within EX28DRAFT_0841 at 844.863 kb on + strand, within EX28DRAFT_0841 at 844.864 kb on - strand, within EX28DRAFT_0841 at 844.864 kb on - strand, within EX28DRAFT_0841 at 844.868 kb on + strand, within EX28DRAFT_0841 at 844.917 kb on + strand, within EX28DRAFT_0841 at 844.981 kb on + strand, within EX28DRAFT_0841 at 845.015 kb on - strand, within EX28DRAFT_0841 at 845.124 kb on + strand at 845.138 kb on + strand at 845.139 kb on - strand at 845.139 kb on - strand at 845.196 kb on + strand at 845.196 kb on + strand at 845.567 kb on + strand, within EX28DRAFT_0842 at 845.568 kb on - strand, within EX28DRAFT_0842 at 845.568 kb on - strand, within EX28DRAFT_0842 at 845.575 kb on + strand, within EX28DRAFT_0842 at 845.837 kb on + strand, within EX28DRAFT_0842 at 845.838 kb on - strand, within EX28DRAFT_0842 at 845.885 kb on + strand, within EX28DRAFT_0842 at 845.885 kb on + strand, within EX28DRAFT_0842 at 845.888 kb on + strand, within EX28DRAFT_0842 at 845.889 kb on - strand, within EX28DRAFT_0842 at 846.068 kb on - strand, within EX28DRAFT_0842 at 846.068 kb on - strand, within EX28DRAFT_0842
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 843,046 + EX28DRAFT_0839 0.79 -1.3 843,047 - EX28DRAFT_0839 0.79 -0.5 843,070 - EX28DRAFT_0839 0.80 -2.1 843,080 + EX28DRAFT_0839 0.81 -1.1 843,080 + EX28DRAFT_0839 0.81 -1.1 843,081 - EX28DRAFT_0839 0.81 -0.2 843,140 + EX28DRAFT_0839 0.84 -0.0 843,141 - EX28DRAFT_0839 0.84 +0.2 843,177 + EX28DRAFT_0839 0.86 -2.9 843,271 - +2.2 843,423 + -2.9 843,423 + -2.1 843,475 - -1.3 843,509 + +0.9 843,597 - EX28DRAFT_0840 0.19 -3.2 843,706 + EX28DRAFT_0840 0.50 -0.8 843,706 + EX28DRAFT_0840 0.50 -0.5 843,709 - EX28DRAFT_0840 0.51 -0.1 843,709 - EX28DRAFT_0840 0.51 -1.4 843,900 - +0.4 843,900 - +0.1 843,951 + -0.1 843,951 + -0.4 843,952 - -1.6 843,952 - -0.1 844,087 + EX28DRAFT_0841 0.11 -0.3 844,088 - EX28DRAFT_0841 0.11 +1.6 844,092 + EX28DRAFT_0841 0.11 -0.6 844,092 + EX28DRAFT_0841 0.11 -1.8 844,145 + EX28DRAFT_0841 0.16 -0.5 844,146 - EX28DRAFT_0841 0.16 +0.0 844,240 + EX28DRAFT_0841 0.24 -1.9 844,240 + EX28DRAFT_0841 0.24 -3.1 844,240 + EX28DRAFT_0841 0.24 +0.5 844,241 - EX28DRAFT_0841 0.24 +0.3 844,283 - EX28DRAFT_0841 0.28 +0.1 844,349 + EX28DRAFT_0841 0.33 -3.1 844,349 + EX28DRAFT_0841 0.33 -0.7 844,807 + EX28DRAFT_0841 0.72 -0.2 844,807 + EX28DRAFT_0841 0.72 -0.7 844,807 + EX28DRAFT_0841 0.72 -1.9 844,807 + EX28DRAFT_0841 0.72 -1.2 844,811 + EX28DRAFT_0841 0.72 -0.5 844,812 - EX28DRAFT_0841 0.72 +0.3 844,812 - EX28DRAFT_0841 0.72 +0.2 844,826 + EX28DRAFT_0841 0.73 +0.3 844,827 - EX28DRAFT_0841 0.74 -0.9 844,863 + EX28DRAFT_0841 0.77 -0.4 844,864 - EX28DRAFT_0841 0.77 +0.6 844,864 - EX28DRAFT_0841 0.77 -1.0 844,868 + EX28DRAFT_0841 0.77 -0.4 844,917 + EX28DRAFT_0841 0.81 -1.5 844,981 + EX28DRAFT_0841 0.86 +1.3 845,015 - EX28DRAFT_0841 0.89 +0.1 845,124 + -1.2 845,138 + +0.3 845,139 - +0.5 845,139 - -0.7 845,196 + -0.6 845,196 + +1.4 845,567 + EX28DRAFT_0842 0.16 -0.2 845,568 - EX28DRAFT_0842 0.16 -2.0 845,568 - EX28DRAFT_0842 0.16 -1.7 845,575 + EX28DRAFT_0842 0.17 -1.5 845,837 + EX28DRAFT_0842 0.38 +0.2 845,838 - EX28DRAFT_0842 0.38 +0.6 845,885 + EX28DRAFT_0842 0.41 -0.5 845,885 + EX28DRAFT_0842 0.41 +1.0 845,888 + EX28DRAFT_0842 0.42 -1.7 845,889 - EX28DRAFT_0842 0.42 +0.4 846,068 - EX28DRAFT_0842 0.56 -0.3 846,068 - EX28DRAFT_0842 0.56 -0.6
Or see this region's nucleotide sequence