Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0839

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0837 and EX28DRAFT_0838 are separated by 30 nucleotidesEX28DRAFT_0838 and EX28DRAFT_0839 are separated by 211 nucleotidesEX28DRAFT_0839 and EX28DRAFT_0840 are separated by 106 nucleotidesEX28DRAFT_0840 and EX28DRAFT_0841 are separated by 72 nucleotides EX28DRAFT_0837: EX28DRAFT_0837 - Uncharacterized protein involved in cation transport, at 840,462 to 841,157 _0837 EX28DRAFT_0838: EX28DRAFT_0838 - Domain of unknown function (DUF1883), at 841,188 to 841,427 _0838 EX28DRAFT_0839: EX28DRAFT_0839 - Methyl-accepting chemotaxis protein, at 841,639 to 843,423 _0839 EX28DRAFT_0840: EX28DRAFT_0840 - Uncharacterized conserved protein involved in intracellular sulfur reduction, at 843,530 to 843,883 _0840 EX28DRAFT_0841: EX28DRAFT_0841 - ANTAR domain/Nitrate and nitrite sensing, at 843,956 to 845,140 _0841 Position (kb) 841 842 843 844Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 840.858 kb on + strand, within EX28DRAFT_0837at 840.858 kb on + strand, within EX28DRAFT_0837at 840.858 kb on + strand, within EX28DRAFT_0837at 840.859 kb on - strand, within EX28DRAFT_0837at 840.859 kb on - strand, within EX28DRAFT_0837at 840.859 kb on - strand, within EX28DRAFT_0837at 840.861 kb on - strand, within EX28DRAFT_0837at 840.920 kb on + strand, within EX28DRAFT_0837at 840.946 kb on - strand, within EX28DRAFT_0837at 841.023 kb on + strand, within EX28DRAFT_0837at 841.183 kb on + strandat 841.202 kb on - strandat 841.202 kb on - strandat 841.353 kb on - strand, within EX28DRAFT_0838at 841.416 kb on + strandat 841.417 kb on - strandat 841.432 kb on + strandat 841.433 kb on - strandat 841.508 kb on - strandat 841.594 kb on + strandat 841.746 kb on + strandat 841.828 kb on - strand, within EX28DRAFT_0839at 841.892 kb on + strand, within EX28DRAFT_0839at 841.996 kb on + strand, within EX28DRAFT_0839at 842.081 kb on - strand, within EX28DRAFT_0839at 842.081 kb on - strand, within EX28DRAFT_0839at 842.425 kb on - strand, within EX28DRAFT_0839at 842.425 kb on - strand, within EX28DRAFT_0839at 842.671 kb on + strand, within EX28DRAFT_0839at 842.671 kb on + strand, within EX28DRAFT_0839at 842.803 kb on - strand, within EX28DRAFT_0839at 843.046 kb on + strand, within EX28DRAFT_0839at 843.047 kb on - strand, within EX28DRAFT_0839at 843.070 kb on - strand, within EX28DRAFT_0839at 843.080 kb on + strand, within EX28DRAFT_0839at 843.080 kb on + strand, within EX28DRAFT_0839at 843.081 kb on - strand, within EX28DRAFT_0839at 843.140 kb on + strand, within EX28DRAFT_0839at 843.141 kb on - strand, within EX28DRAFT_0839at 843.177 kb on + strand, within EX28DRAFT_0839at 843.271 kb on - strandat 843.423 kb on + strandat 843.423 kb on + strandat 843.475 kb on - strandat 843.509 kb on + strandat 843.597 kb on - strand, within EX28DRAFT_0840at 843.706 kb on + strand, within EX28DRAFT_0840at 843.706 kb on + strand, within EX28DRAFT_0840at 843.709 kb on - strand, within EX28DRAFT_0840at 843.709 kb on - strand, within EX28DRAFT_0840at 843.900 kb on - strandat 843.900 kb on - strandat 843.951 kb on + strandat 843.951 kb on + strandat 843.952 kb on - strandat 843.952 kb on - strandat 844.087 kb on + strand, within EX28DRAFT_0841at 844.088 kb on - strand, within EX28DRAFT_0841at 844.092 kb on + strand, within EX28DRAFT_0841at 844.092 kb on + strand, within EX28DRAFT_0841at 844.145 kb on + strand, within EX28DRAFT_0841at 844.146 kb on - strand, within EX28DRAFT_0841at 844.240 kb on + strand, within EX28DRAFT_0841at 844.240 kb on + strand, within EX28DRAFT_0841at 844.240 kb on + strand, within EX28DRAFT_0841at 844.241 kb on - strand, within EX28DRAFT_0841at 844.283 kb on - strand, within EX28DRAFT_0841at 844.349 kb on + strand, within EX28DRAFT_0841at 844.349 kb on + strand, within EX28DRAFT_0841

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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840,858 + EX28DRAFT_0837 0.57 -1.8
840,858 + EX28DRAFT_0837 0.57 -2.6
840,858 + EX28DRAFT_0837 0.57 -0.6
840,859 - EX28DRAFT_0837 0.57 +0.7
840,859 - EX28DRAFT_0837 0.57 -2.4
840,859 - EX28DRAFT_0837 0.57 -2.5
840,861 - EX28DRAFT_0837 0.57 -1.9
840,920 + EX28DRAFT_0837 0.66 -0.4
840,946 - EX28DRAFT_0837 0.70 -1.9
841,023 + EX28DRAFT_0837 0.81 -0.8
841,183 + -0.7
841,202 - +1.3
841,202 - -0.1
841,353 - EX28DRAFT_0838 0.69 +1.2
841,416 + -0.6
841,417 - -0.8
841,432 + -0.0
841,433 - +0.2
841,508 - +0.9
841,594 + +0.4
841,746 + +3.0
841,828 - EX28DRAFT_0839 0.11 -0.6
841,892 + EX28DRAFT_0839 0.14 +0.6
841,996 + EX28DRAFT_0839 0.20 -0.7
842,081 - EX28DRAFT_0839 0.25 -0.2
842,081 - EX28DRAFT_0839 0.25 -4.2
842,425 - EX28DRAFT_0839 0.44 +3.2
842,425 - EX28DRAFT_0839 0.44 -0.2
842,671 + EX28DRAFT_0839 0.58 +1.6
842,671 + EX28DRAFT_0839 0.58 +3.4
842,803 - EX28DRAFT_0839 0.65 +0.2
843,046 + EX28DRAFT_0839 0.79 -1.3
843,047 - EX28DRAFT_0839 0.79 -0.5
843,070 - EX28DRAFT_0839 0.80 -2.1
843,080 + EX28DRAFT_0839 0.81 -1.1
843,080 + EX28DRAFT_0839 0.81 -1.1
843,081 - EX28DRAFT_0839 0.81 -0.2
843,140 + EX28DRAFT_0839 0.84 -0.0
843,141 - EX28DRAFT_0839 0.84 +0.2
843,177 + EX28DRAFT_0839 0.86 -2.9
843,271 - +2.2
843,423 + -2.9
843,423 + -2.1
843,475 - -1.3
843,509 + +0.9
843,597 - EX28DRAFT_0840 0.19 -3.2
843,706 + EX28DRAFT_0840 0.50 -0.8
843,706 + EX28DRAFT_0840 0.50 -0.5
843,709 - EX28DRAFT_0840 0.51 -0.1
843,709 - EX28DRAFT_0840 0.51 -1.4
843,900 - +0.4
843,900 - +0.1
843,951 + -0.1
843,951 + -0.4
843,952 - -1.6
843,952 - -0.1
844,087 + EX28DRAFT_0841 0.11 -0.3
844,088 - EX28DRAFT_0841 0.11 +1.6
844,092 + EX28DRAFT_0841 0.11 -0.6
844,092 + EX28DRAFT_0841 0.11 -1.8
844,145 + EX28DRAFT_0841 0.16 -0.5
844,146 - EX28DRAFT_0841 0.16 +0.0
844,240 + EX28DRAFT_0841 0.24 -1.9
844,240 + EX28DRAFT_0841 0.24 -3.1
844,240 + EX28DRAFT_0841 0.24 +0.5
844,241 - EX28DRAFT_0841 0.24 +0.3
844,283 - EX28DRAFT_0841 0.28 +0.1
844,349 + EX28DRAFT_0841 0.33 -3.1
844,349 + EX28DRAFT_0841 0.33 -0.7

Or see this region's nucleotide sequence