Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0835 and EX28DRAFT_0836 are separated by 270 nucleotides EX28DRAFT_0836 and EX28DRAFT_0837 are separated by 177 nucleotides EX28DRAFT_0837 and EX28DRAFT_0838 are separated by 30 nucleotides
EX28DRAFT_0835: EX28DRAFT_0835 - calcium/proton exchanger, at 838,683 to 839,783
_0835
EX28DRAFT_0836: EX28DRAFT_0836 - Putative cation transport regulator, at 840,054 to 840,284
_0836
EX28DRAFT_0837: EX28DRAFT_0837 - Uncharacterized protein involved in cation transport, at 840,462 to 841,157
_0837
EX28DRAFT_0838: EX28DRAFT_0838 - Domain of unknown function (DUF1883), at 841,188 to 841,427
_0838
Position (kb) 840
841 Strain fitness (log2 ratio) -2
-1
0
1
2 at 839.327 kb on + strand, within EX28DRAFT_0835 at 839.357 kb on - strand, within EX28DRAFT_0835 at 839.364 kb on - strand, within EX28DRAFT_0835 at 839.382 kb on - strand, within EX28DRAFT_0835 at 839.384 kb on - strand, within EX28DRAFT_0835 at 839.451 kb on - strand, within EX28DRAFT_0835 at 839.533 kb on - strand, within EX28DRAFT_0835 at 839.559 kb on + strand, within EX28DRAFT_0835 at 839.559 kb on + strand, within EX28DRAFT_0835 at 839.559 kb on + strand, within EX28DRAFT_0835 at 839.654 kb on + strand, within EX28DRAFT_0835 at 839.655 kb on - strand, within EX28DRAFT_0835 at 839.655 kb on - strand, within EX28DRAFT_0835 at 839.661 kb on - strand, within EX28DRAFT_0835 at 840.122 kb on + strand, within EX28DRAFT_0836 at 840.123 kb on - strand, within EX28DRAFT_0836 at 840.159 kb on + strand, within EX28DRAFT_0836 at 840.160 kb on - strand, within EX28DRAFT_0836 at 840.264 kb on - strand at 840.264 kb on - strand at 840.282 kb on + strand at 840.282 kb on + strand at 840.367 kb on - strand at 840.421 kb on + strand at 840.421 kb on + strand at 840.422 kb on - strand at 840.497 kb on + strand at 840.858 kb on + strand, within EX28DRAFT_0837 at 840.858 kb on + strand, within EX28DRAFT_0837 at 840.858 kb on + strand, within EX28DRAFT_0837 at 840.859 kb on - strand, within EX28DRAFT_0837 at 840.859 kb on - strand, within EX28DRAFT_0837 at 840.859 kb on - strand, within EX28DRAFT_0837 at 840.861 kb on - strand, within EX28DRAFT_0837 at 840.920 kb on + strand, within EX28DRAFT_0837 at 840.946 kb on - strand, within EX28DRAFT_0837 at 841.023 kb on + strand, within EX28DRAFT_0837 at 841.183 kb on + strand at 841.202 kb on - strand at 841.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 839,327 + EX28DRAFT_0835 0.58 -0.6 839,357 - EX28DRAFT_0835 0.61 +1.9 839,364 - EX28DRAFT_0835 0.62 +0.9 839,382 - EX28DRAFT_0835 0.63 +0.2 839,384 - EX28DRAFT_0835 0.64 +0.4 839,451 - EX28DRAFT_0835 0.70 -0.1 839,533 - EX28DRAFT_0835 0.77 -0.2 839,559 + EX28DRAFT_0835 0.80 +0.1 839,559 + EX28DRAFT_0835 0.80 +0.9 839,559 + EX28DRAFT_0835 0.80 +0.6 839,654 + EX28DRAFT_0835 0.88 -0.2 839,655 - EX28DRAFT_0835 0.88 +1.7 839,655 - EX28DRAFT_0835 0.88 -0.3 839,661 - EX28DRAFT_0835 0.89 -0.2 840,122 + EX28DRAFT_0836 0.29 -0.5 840,123 - EX28DRAFT_0836 0.30 +1.4 840,159 + EX28DRAFT_0836 0.45 -0.1 840,160 - EX28DRAFT_0836 0.46 +0.2 840,264 - +2.0 840,264 - -0.3 840,282 + +0.8 840,282 + -0.1 840,367 - -0.8 840,421 + -0.5 840,421 + +0.2 840,422 - +0.4 840,497 + -0.3 840,858 + EX28DRAFT_0837 0.57 -1.8 840,858 + EX28DRAFT_0837 0.57 -2.6 840,858 + EX28DRAFT_0837 0.57 -0.6 840,859 - EX28DRAFT_0837 0.57 +0.7 840,859 - EX28DRAFT_0837 0.57 -2.4 840,859 - EX28DRAFT_0837 0.57 -2.5 840,861 - EX28DRAFT_0837 0.57 -1.9 840,920 + EX28DRAFT_0837 0.66 -0.4 840,946 - EX28DRAFT_0837 0.70 -1.9 841,023 + EX28DRAFT_0837 0.81 -0.8 841,183 + -0.7 841,202 - +1.3 841,202 - -0.1
Or see this region's nucleotide sequence