Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0808 and EX28DRAFT_0809 are separated by 65 nucleotides EX28DRAFT_0809 and EX28DRAFT_0810 are separated by 58 nucleotides EX28DRAFT_0810 and EX28DRAFT_0811 are separated by 115 nucleotides
EX28DRAFT_0808: EX28DRAFT_0808 - Serine/threonine protein kinase, at 810,126 to 811,544
_0808
EX28DRAFT_0809: EX28DRAFT_0809 - Rhs element Vgr protein, at 811,610 to 814,150
_0809
EX28DRAFT_0810: EX28DRAFT_0810 - hypothetical protein, at 814,209 to 814,643
_0810
EX28DRAFT_0811: EX28DRAFT_0811 - hypothetical protein, at 814,759 to 815,274
_0811
Position (kb) 811
812
813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 810.759 kb on + strand, within EX28DRAFT_0808 at 810.805 kb on - strand, within EX28DRAFT_0808 at 810.919 kb on - strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.010 kb on - strand, within EX28DRAFT_0808 at 811.010 kb on - strand, within EX28DRAFT_0808 at 811.353 kb on + strand, within EX28DRAFT_0808 at 811.354 kb on - strand, within EX28DRAFT_0808 at 811.428 kb on + strand at 811.543 kb on - strand at 811.589 kb on - strand at 811.593 kb on + strand at 811.594 kb on - strand at 811.610 kb on - strand at 811.805 kb on + strand at 812.196 kb on - strand, within EX28DRAFT_0809 at 812.375 kb on + strand, within EX28DRAFT_0809 at 812.375 kb on + strand, within EX28DRAFT_0809 at 812.420 kb on + strand, within EX28DRAFT_0809 at 812.553 kb on - strand, within EX28DRAFT_0809 at 812.553 kb on - strand, within EX28DRAFT_0809 at 812.756 kb on + strand, within EX28DRAFT_0809 at 812.932 kb on + strand, within EX28DRAFT_0809 at 812.932 kb on + strand, within EX28DRAFT_0809 at 812.936 kb on - strand, within EX28DRAFT_0809 at 812.936 kb on - strand, within EX28DRAFT_0809 at 812.951 kb on + strand, within EX28DRAFT_0809 at 812.951 kb on + strand, within EX28DRAFT_0809 at 813.278 kb on + strand, within EX28DRAFT_0809 at 813.279 kb on - strand, within EX28DRAFT_0809 at 813.279 kb on - strand, within EX28DRAFT_0809 at 813.284 kb on - strand, within EX28DRAFT_0809 at 813.401 kb on + strand, within EX28DRAFT_0809 at 813.401 kb on + strand, within EX28DRAFT_0809 at 813.401 kb on + strand, within EX28DRAFT_0809 at 813.401 kb on + strand, within EX28DRAFT_0809 at 813.402 kb on - strand, within EX28DRAFT_0809 at 813.402 kb on - strand, within EX28DRAFT_0809 at 813.403 kb on + strand, within EX28DRAFT_0809 at 813.404 kb on - strand, within EX28DRAFT_0809 at 813.433 kb on + strand, within EX28DRAFT_0809 at 813.434 kb on - strand, within EX28DRAFT_0809 at 813.434 kb on - strand, within EX28DRAFT_0809 at 813.478 kb on + strand, within EX28DRAFT_0809 at 813.487 kb on + strand, within EX28DRAFT_0809 at 813.532 kb on + strand, within EX28DRAFT_0809 at 813.533 kb on - strand, within EX28DRAFT_0809 at 813.627 kb on + strand, within EX28DRAFT_0809 at 813.627 kb on + strand, within EX28DRAFT_0809 at 813.627 kb on + strand, within EX28DRAFT_0809 at 813.628 kb on - strand, within EX28DRAFT_0809 at 813.628 kb on - strand, within EX28DRAFT_0809 at 813.628 kb on - strand, within EX28DRAFT_0809 at 813.631 kb on + strand, within EX28DRAFT_0809 at 813.631 kb on + strand, within EX28DRAFT_0809 at 813.669 kb on + strand, within EX28DRAFT_0809 at 813.669 kb on + strand, within EX28DRAFT_0809 at 813.669 kb on + strand, within EX28DRAFT_0809 at 813.670 kb on - strand, within EX28DRAFT_0809 at 813.673 kb on + strand, within EX28DRAFT_0809 at 813.673 kb on + strand, within EX28DRAFT_0809 at 813.673 kb on + strand, within EX28DRAFT_0809 at 813.673 kb on + strand, within EX28DRAFT_0809 at 813.673 kb on + strand, within EX28DRAFT_0809 at 813.673 kb on + strand, within EX28DRAFT_0809 at 813.674 kb on - strand, within EX28DRAFT_0809 at 813.674 kb on - strand, within EX28DRAFT_0809 at 813.674 kb on - strand, within EX28DRAFT_0809 at 813.719 kb on - strand, within EX28DRAFT_0809 at 813.752 kb on - strand, within EX28DRAFT_0809 at 813.754 kb on + strand, within EX28DRAFT_0809 at 813.829 kb on - strand, within EX28DRAFT_0809 at 813.829 kb on - strand, within EX28DRAFT_0809 at 813.830 kb on + strand, within EX28DRAFT_0809 at 813.831 kb on - strand, within EX28DRAFT_0809 at 813.866 kb on + strand, within EX28DRAFT_0809 at 813.992 kb on + strand at 813.992 kb on + strand at 813.992 kb on + strand at 813.992 kb on + strand at 813.993 kb on - strand at 813.994 kb on + strand at 813.994 kb on + strand at 813.994 kb on + strand at 813.995 kb on - strand at 813.997 kb on + strand at 813.998 kb on - strand at 813.998 kb on - strand at 813.998 kb on - strand at 814.000 kb on + strand at 814.000 kb on + strand at 814.001 kb on - strand at 814.005 kb on - strand at 814.005 kb on - strand at 814.005 kb on - strand at 814.005 kb on - strand at 814.028 kb on - strand at 814.028 kb on - strand at 814.049 kb on - strand at 814.049 kb on - strand at 814.116 kb on - strand at 814.118 kb on + strand at 814.131 kb on - strand at 814.148 kb on + strand at 814.148 kb on + strand at 814.641 kb on + strand at 814.694 kb on + strand at 814.716 kb on + strand at 814.716 kb on + strand at 814.716 kb on + strand at 814.716 kb on + strand at 814.800 kb on + strand at 814.955 kb on - strand, within EX28DRAFT_0811 at 814.991 kb on + strand, within EX28DRAFT_0811 at 814.991 kb on + strand, within EX28DRAFT_0811 at 814.991 kb on + strand, within EX28DRAFT_0811 at 815.042 kb on - strand, within EX28DRAFT_0811 at 815.043 kb on + strand, within EX28DRAFT_0811 at 815.043 kb on + strand, within EX28DRAFT_0811 at 815.043 kb on + strand, within EX28DRAFT_0811 at 815.044 kb on - strand, within EX28DRAFT_0811
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 810,759 + EX28DRAFT_0808 0.45 +1.0 810,805 - EX28DRAFT_0808 0.48 +1.7 810,919 - EX28DRAFT_0808 0.56 -1.3 811,009 + EX28DRAFT_0808 0.62 +1.3 811,009 + EX28DRAFT_0808 0.62 +1.1 811,009 + EX28DRAFT_0808 0.62 +3.1 811,009 + EX28DRAFT_0808 0.62 +0.7 811,010 - EX28DRAFT_0808 0.62 -0.8 811,010 - EX28DRAFT_0808 0.62 -0.4 811,353 + EX28DRAFT_0808 0.86 -2.0 811,354 - EX28DRAFT_0808 0.87 -0.6 811,428 + +0.8 811,543 - +1.9 811,589 - +0.5 811,593 + -2.7 811,594 - -1.3 811,610 - +0.1 811,805 + +0.7 812,196 - EX28DRAFT_0809 0.23 -0.6 812,375 + EX28DRAFT_0809 0.30 +0.0 812,375 + EX28DRAFT_0809 0.30 -0.8 812,420 + EX28DRAFT_0809 0.32 -1.3 812,553 - EX28DRAFT_0809 0.37 -0.6 812,553 - EX28DRAFT_0809 0.37 -1.5 812,756 + EX28DRAFT_0809 0.45 +0.5 812,932 + EX28DRAFT_0809 0.52 -3.3 812,932 + EX28DRAFT_0809 0.52 +0.8 812,936 - EX28DRAFT_0809 0.52 -0.1 812,936 - EX28DRAFT_0809 0.52 +0.2 812,951 + EX28DRAFT_0809 0.53 +4.5 812,951 + EX28DRAFT_0809 0.53 +0.1 813,278 + EX28DRAFT_0809 0.66 -0.2 813,279 - EX28DRAFT_0809 0.66 +1.3 813,279 - EX28DRAFT_0809 0.66 -0.2 813,284 - EX28DRAFT_0809 0.66 -2.8 813,401 + EX28DRAFT_0809 0.70 -0.0 813,401 + EX28DRAFT_0809 0.70 -0.2 813,401 + EX28DRAFT_0809 0.70 +4.4 813,401 + EX28DRAFT_0809 0.70 -0.1 813,402 - EX28DRAFT_0809 0.71 -2.3 813,402 - EX28DRAFT_0809 0.71 -1.0 813,403 + EX28DRAFT_0809 0.71 +0.1 813,404 - EX28DRAFT_0809 0.71 -1.2 813,433 + EX28DRAFT_0809 0.72 -1.2 813,434 - EX28DRAFT_0809 0.72 +0.5 813,434 - EX28DRAFT_0809 0.72 +0.3 813,478 + EX28DRAFT_0809 0.74 +0.6 813,487 + EX28DRAFT_0809 0.74 +0.1 813,532 + EX28DRAFT_0809 0.76 +0.7 813,533 - EX28DRAFT_0809 0.76 -2.8 813,627 + EX28DRAFT_0809 0.79 +0.9 813,627 + EX28DRAFT_0809 0.79 +1.7 813,627 + EX28DRAFT_0809 0.79 +0.3 813,628 - EX28DRAFT_0809 0.79 -0.2 813,628 - EX28DRAFT_0809 0.79 -2.3 813,628 - EX28DRAFT_0809 0.79 +0.4 813,631 + EX28DRAFT_0809 0.80 +2.0 813,631 + EX28DRAFT_0809 0.80 -0.2 813,669 + EX28DRAFT_0809 0.81 -1.3 813,669 + EX28DRAFT_0809 0.81 +0.9 813,669 + EX28DRAFT_0809 0.81 +1.8 813,670 - EX28DRAFT_0809 0.81 +0.6 813,673 + EX28DRAFT_0809 0.81 +0.4 813,673 + EX28DRAFT_0809 0.81 +0.1 813,673 + EX28DRAFT_0809 0.81 +0.5 813,673 + EX28DRAFT_0809 0.81 +0.4 813,673 + EX28DRAFT_0809 0.81 +0.5 813,673 + EX28DRAFT_0809 0.81 -0.8 813,674 - EX28DRAFT_0809 0.81 -1.2 813,674 - EX28DRAFT_0809 0.81 +0.1 813,674 - EX28DRAFT_0809 0.81 -0.1 813,719 - EX28DRAFT_0809 0.83 -0.8 813,752 - EX28DRAFT_0809 0.84 +0.8 813,754 + EX28DRAFT_0809 0.84 +0.9 813,829 - EX28DRAFT_0809 0.87 +0.5 813,829 - EX28DRAFT_0809 0.87 -1.2 813,830 + EX28DRAFT_0809 0.87 -1.7 813,831 - EX28DRAFT_0809 0.87 +1.2 813,866 + EX28DRAFT_0809 0.89 -0.8 813,992 + +2.4 813,992 + +0.6 813,992 + +0.1 813,992 + -0.0 813,993 - -2.0 813,994 + +0.1 813,994 + +6.2 813,994 + +0.6 813,995 - +0.7 813,997 + +0.2 813,998 - +0.1 813,998 - +0.3 813,998 - +0.2 814,000 + +0.3 814,000 + +1.2 814,001 - -1.3 814,005 - -2.7 814,005 - +0.0 814,005 - +0.7 814,005 - -0.7 814,028 - -0.4 814,028 - -0.0 814,049 - +1.7 814,049 - +0.2 814,116 - +0.8 814,118 + -0.5 814,131 - +0.3 814,148 + +2.3 814,148 + -1.3 814,641 + -1.0 814,694 + +0.7 814,716 + -0.3 814,716 + -0.3 814,716 + +0.9 814,716 + +0.6 814,800 + -0.3 814,955 - EX28DRAFT_0811 0.38 +0.2 814,991 + EX28DRAFT_0811 0.45 +2.5 814,991 + EX28DRAFT_0811 0.45 -3.4 814,991 + EX28DRAFT_0811 0.45 -0.1 815,042 - EX28DRAFT_0811 0.55 -1.7 815,043 + EX28DRAFT_0811 0.55 +1.0 815,043 + EX28DRAFT_0811 0.55 -0.7 815,043 + EX28DRAFT_0811 0.55 -1.6 815,044 - EX28DRAFT_0811 0.55 +0.9
Or see this region's nucleotide sequence