Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0807 and EX28DRAFT_0808 are separated by 24 nucleotides EX28DRAFT_0808 and EX28DRAFT_0809 are separated by 65 nucleotides
EX28DRAFT_0807: EX28DRAFT_0807 - type VI secretion ATPase, ClpV1 family, at 807,486 to 810,101
_0807
EX28DRAFT_0808: EX28DRAFT_0808 - Serine/threonine protein kinase, at 810,126 to 811,544
_0808
EX28DRAFT_0809: EX28DRAFT_0809 - Rhs element Vgr protein, at 811,610 to 814,150
_0809
Position (kb) 810
811
812 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 809.306 kb on + strand, within EX28DRAFT_0807 at 809.307 kb on - strand, within EX28DRAFT_0807 at 809.464 kb on + strand, within EX28DRAFT_0807 at 809.464 kb on + strand, within EX28DRAFT_0807 at 809.465 kb on - strand, within EX28DRAFT_0807 at 809.465 kb on - strand, within EX28DRAFT_0807 at 809.465 kb on - strand, within EX28DRAFT_0807 at 809.645 kb on + strand, within EX28DRAFT_0807 at 809.799 kb on + strand, within EX28DRAFT_0807 at 809.800 kb on - strand, within EX28DRAFT_0807 at 809.888 kb on + strand at 809.889 kb on - strand at 810.014 kb on - strand at 810.014 kb on - strand at 810.102 kb on + strand at 810.121 kb on - strand at 810.140 kb on + strand at 810.287 kb on + strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.486 kb on + strand, within EX28DRAFT_0808 at 810.606 kb on + strand, within EX28DRAFT_0808 at 810.759 kb on + strand, within EX28DRAFT_0808 at 810.805 kb on - strand, within EX28DRAFT_0808 at 810.919 kb on - strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.010 kb on - strand, within EX28DRAFT_0808 at 811.010 kb on - strand, within EX28DRAFT_0808 at 811.353 kb on + strand, within EX28DRAFT_0808 at 811.354 kb on - strand, within EX28DRAFT_0808 at 811.428 kb on + strand at 811.543 kb on - strand at 811.589 kb on - strand at 811.593 kb on + strand at 811.594 kb on - strand at 811.610 kb on - strand at 811.805 kb on + strand at 812.196 kb on - strand, within EX28DRAFT_0809 at 812.375 kb on + strand, within EX28DRAFT_0809 at 812.375 kb on + strand, within EX28DRAFT_0809 at 812.420 kb on + strand, within EX28DRAFT_0809
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 809,306 + EX28DRAFT_0807 0.70 +0.9 809,307 - EX28DRAFT_0807 0.70 -1.8 809,464 + EX28DRAFT_0807 0.76 -0.6 809,464 + EX28DRAFT_0807 0.76 +0.6 809,465 - EX28DRAFT_0807 0.76 +0.2 809,465 - EX28DRAFT_0807 0.76 +0.0 809,465 - EX28DRAFT_0807 0.76 +1.4 809,645 + EX28DRAFT_0807 0.83 -0.4 809,799 + EX28DRAFT_0807 0.88 -0.5 809,800 - EX28DRAFT_0807 0.88 +1.0 809,888 + -2.6 809,889 - +0.8 810,014 - +0.8 810,014 - +0.9 810,102 + -2.6 810,121 - -2.4 810,140 + +1.3 810,287 + EX28DRAFT_0808 0.11 +2.7 810,469 - EX28DRAFT_0808 0.24 +0.4 810,469 - EX28DRAFT_0808 0.24 -1.1 810,469 - EX28DRAFT_0808 0.24 -0.7 810,469 - EX28DRAFT_0808 0.24 +1.9 810,486 + EX28DRAFT_0808 0.25 +0.8 810,606 + EX28DRAFT_0808 0.34 -2.7 810,759 + EX28DRAFT_0808 0.45 +1.0 810,805 - EX28DRAFT_0808 0.48 +1.7 810,919 - EX28DRAFT_0808 0.56 -1.3 811,009 + EX28DRAFT_0808 0.62 +1.3 811,009 + EX28DRAFT_0808 0.62 +1.1 811,009 + EX28DRAFT_0808 0.62 +3.1 811,009 + EX28DRAFT_0808 0.62 +0.7 811,010 - EX28DRAFT_0808 0.62 -0.8 811,010 - EX28DRAFT_0808 0.62 -0.4 811,353 + EX28DRAFT_0808 0.86 -2.0 811,354 - EX28DRAFT_0808 0.87 -0.6 811,428 + +0.8 811,543 - +1.9 811,589 - +0.5 811,593 + -2.7 811,594 - -1.3 811,610 - +0.1 811,805 + +0.7 812,196 - EX28DRAFT_0809 0.23 -0.6 812,375 + EX28DRAFT_0809 0.30 +0.0 812,375 + EX28DRAFT_0809 0.30 -0.8 812,420 + EX28DRAFT_0809 0.32 -1.3
Or see this region's nucleotide sequence