Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0805 and EX28DRAFT_0806 overlap by 4 nucleotides EX28DRAFT_0806 and EX28DRAFT_0807 are separated by 34 nucleotides
EX28DRAFT_0805: EX28DRAFT_0805 - type VI secretion protein, VC_A0110 family, at 804,540 to 806,411
_0805
EX28DRAFT_0806: EX28DRAFT_0806 - type VI secretion protein, VC_A0111 family, at 806,408 to 807,451
_0806
EX28DRAFT_0807: EX28DRAFT_0807 - type VI secretion ATPase, ClpV1 family, at 807,486 to 810,101
_0807
Position (kb) 806
807
808 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 805.434 kb on - strand, within EX28DRAFT_0805 at 805.490 kb on + strand, within EX28DRAFT_0805 at 805.557 kb on + strand, within EX28DRAFT_0805 at 805.558 kb on - strand, within EX28DRAFT_0805 at 805.594 kb on - strand, within EX28DRAFT_0805 at 805.620 kb on + strand, within EX28DRAFT_0805 at 805.621 kb on - strand, within EX28DRAFT_0805 at 805.699 kb on - strand, within EX28DRAFT_0805 at 805.777 kb on - strand, within EX28DRAFT_0805 at 805.845 kb on + strand, within EX28DRAFT_0805 at 805.846 kb on - strand, within EX28DRAFT_0805 at 805.847 kb on + strand, within EX28DRAFT_0805 at 805.847 kb on + strand, within EX28DRAFT_0805 at 805.848 kb on - strand, within EX28DRAFT_0805 at 805.848 kb on - strand, within EX28DRAFT_0805 at 806.038 kb on - strand, within EX28DRAFT_0805 at 806.038 kb on - strand, within EX28DRAFT_0805 at 806.095 kb on + strand, within EX28DRAFT_0805 at 806.393 kb on + strand at 806.683 kb on + strand, within EX28DRAFT_0806 at 806.684 kb on - strand, within EX28DRAFT_0806 at 806.759 kb on + strand, within EX28DRAFT_0806 at 806.759 kb on + strand, within EX28DRAFT_0806 at 806.760 kb on - strand, within EX28DRAFT_0806 at 806.828 kb on + strand, within EX28DRAFT_0806 at 807.039 kb on - strand, within EX28DRAFT_0806 at 807.044 kb on - strand, within EX28DRAFT_0806 at 807.227 kb on + strand, within EX28DRAFT_0806 at 807.228 kb on - strand, within EX28DRAFT_0806 at 807.228 kb on - strand, within EX28DRAFT_0806 at 807.376 kb on - strand at 807.380 kb on + strand at 807.434 kb on + strand at 807.449 kb on + strand at 807.459 kb on - strand at 807.497 kb on + strand at 807.535 kb on + strand at 807.535 kb on + strand at 807.536 kb on - strand at 807.539 kb on + strand at 807.539 kb on + strand at 807.588 kb on + strand at 807.588 kb on + strand at 807.589 kb on - strand at 807.759 kb on - strand, within EX28DRAFT_0807 at 808.373 kb on + strand, within EX28DRAFT_0807
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 805,434 - EX28DRAFT_0805 0.48 +0.8 805,490 + EX28DRAFT_0805 0.51 -1.0 805,557 + EX28DRAFT_0805 0.54 +0.6 805,558 - EX28DRAFT_0805 0.54 +0.3 805,594 - EX28DRAFT_0805 0.56 +0.6 805,620 + EX28DRAFT_0805 0.58 -1.3 805,621 - EX28DRAFT_0805 0.58 +1.3 805,699 - EX28DRAFT_0805 0.62 +0.2 805,777 - EX28DRAFT_0805 0.66 +1.7 805,845 + EX28DRAFT_0805 0.70 -0.6 805,846 - EX28DRAFT_0805 0.70 +0.3 805,847 + EX28DRAFT_0805 0.70 -1.5 805,847 + EX28DRAFT_0805 0.70 -0.8 805,848 - EX28DRAFT_0805 0.70 -0.0 805,848 - EX28DRAFT_0805 0.70 +0.7 806,038 - EX28DRAFT_0805 0.80 +0.5 806,038 - EX28DRAFT_0805 0.80 +0.1 806,095 + EX28DRAFT_0805 0.83 -0.9 806,393 + -1.4 806,683 + EX28DRAFT_0806 0.26 -0.8 806,684 - EX28DRAFT_0806 0.26 +3.9 806,759 + EX28DRAFT_0806 0.34 +0.7 806,759 + EX28DRAFT_0806 0.34 -1.5 806,760 - EX28DRAFT_0806 0.34 +2.3 806,828 + EX28DRAFT_0806 0.40 -2.4 807,039 - EX28DRAFT_0806 0.60 -0.1 807,044 - EX28DRAFT_0806 0.61 -1.6 807,227 + EX28DRAFT_0806 0.78 -2.0 807,228 - EX28DRAFT_0806 0.79 +0.1 807,228 - EX28DRAFT_0806 0.79 +1.4 807,376 - -2.4 807,380 + -1.5 807,434 + -0.9 807,449 + +2.0 807,459 - +0.2 807,497 + -0.5 807,535 + -1.1 807,535 + +2.7 807,536 - +1.3 807,539 + +1.2 807,539 + -1.8 807,588 + +0.2 807,588 + -0.2 807,589 - -1.0 807,759 - EX28DRAFT_0807 0.10 +3.0 808,373 + EX28DRAFT_0807 0.34 -0.0
Or see this region's nucleotide sequence