Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0802 and EX28DRAFT_0803 are separated by 9 nucleotides EX28DRAFT_0803 and EX28DRAFT_0804 overlap by 8 nucleotides EX28DRAFT_0804 and EX28DRAFT_0805 are separated by 2 nucleotides
EX28DRAFT_0802: EX28DRAFT_0802 - hypothetical protein, at 802,161 to 803,159
_0802
EX28DRAFT_0803: EX28DRAFT_0803 - Protein of avirulence locus involved in temperature-dependent protein secretion, at 803,169 to 803,981
_0803
EX28DRAFT_0804: EX28DRAFT_0804 - type VI secretion system lysozyme-like protein, at 803,974 to 804,537
_0804
EX28DRAFT_0805: EX28DRAFT_0805 - type VI secretion protein, VC_A0110 family, at 804,540 to 806,411
_0805
Position (kb) 803
804
805 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 803.031 kb on - strand, within EX28DRAFT_0802 at 803.174 kb on + strand at 803.174 kb on + strand at 803.174 kb on + strand at 803.174 kb on + strand at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.881 kb on - strand, within EX28DRAFT_0803 at 804.396 kb on + strand, within EX28DRAFT_0804 at 804.536 kb on - strand at 804.548 kb on + strand at 804.561 kb on + strand at 804.565 kb on - strand at 804.583 kb on - strand at 804.623 kb on + strand at 804.674 kb on + strand at 804.782 kb on + strand, within EX28DRAFT_0805 at 804.786 kb on + strand, within EX28DRAFT_0805 at 804.786 kb on + strand, within EX28DRAFT_0805 at 804.787 kb on - strand, within EX28DRAFT_0805 at 804.787 kb on - strand, within EX28DRAFT_0805 at 804.927 kb on + strand, within EX28DRAFT_0805 at 804.927 kb on + strand, within EX28DRAFT_0805 at 804.927 kb on + strand, within EX28DRAFT_0805 at 804.928 kb on - strand, within EX28DRAFT_0805 at 804.929 kb on + strand, within EX28DRAFT_0805 at 805.326 kb on + strand, within EX28DRAFT_0805 at 805.326 kb on + strand, within EX28DRAFT_0805 at 805.327 kb on - strand, within EX28DRAFT_0805 at 805.434 kb on - strand, within EX28DRAFT_0805 at 805.490 kb on + strand, within EX28DRAFT_0805
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 803,031 - EX28DRAFT_0802 0.87 +1.4 803,174 + -0.3 803,174 + +5.6 803,174 + -2.3 803,174 + +0.3 803,568 - EX28DRAFT_0803 0.49 +2.4 803,568 - EX28DRAFT_0803 0.49 +0.8 803,568 - EX28DRAFT_0803 0.49 -0.6 803,881 - EX28DRAFT_0803 0.88 -0.1 804,396 + EX28DRAFT_0804 0.75 -1.9 804,536 - +1.8 804,548 + +0.4 804,561 + +1.3 804,565 - +0.2 804,583 - -0.9 804,623 + +1.9 804,674 + -0.5 804,782 + EX28DRAFT_0805 0.13 +3.2 804,786 + EX28DRAFT_0805 0.13 +2.1 804,786 + EX28DRAFT_0805 0.13 +2.0 804,787 - EX28DRAFT_0805 0.13 -0.9 804,787 - EX28DRAFT_0805 0.13 -0.2 804,927 + EX28DRAFT_0805 0.21 -1.6 804,927 + EX28DRAFT_0805 0.21 +0.2 804,927 + EX28DRAFT_0805 0.21 -0.1 804,928 - EX28DRAFT_0805 0.21 -0.1 804,929 + EX28DRAFT_0805 0.21 -0.8 805,326 + EX28DRAFT_0805 0.42 +0.2 805,326 + EX28DRAFT_0805 0.42 -0.8 805,327 - EX28DRAFT_0805 0.42 +0.1 805,434 - EX28DRAFT_0805 0.48 +0.8 805,490 + EX28DRAFT_0805 0.51 -1.0
Or see this region's nucleotide sequence