Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0800 and EX28DRAFT_0801 overlap by 4 nucleotides EX28DRAFT_0801 and EX28DRAFT_0802 are separated by 16 nucleotides
EX28DRAFT_0800: EX28DRAFT_0800 - FHA domain protein, at 799,587 to 801,350
_0800
EX28DRAFT_0801: EX28DRAFT_0801 - Serine/threonine protein phosphatase, at 801,347 to 802,144
_0801
EX28DRAFT_0802: EX28DRAFT_0802 - hypothetical protein, at 802,161 to 803,159
_0802
Position (kb) 801
802
803 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 800.843 kb on + strand, within EX28DRAFT_0800 at 801.012 kb on - strand, within EX28DRAFT_0800 at 801.120 kb on - strand, within EX28DRAFT_0800 at 801.226 kb on - strand at 801.294 kb on + strand at 801.421 kb on - strand at 801.511 kb on + strand, within EX28DRAFT_0801 at 801.512 kb on - strand, within EX28DRAFT_0801 at 801.512 kb on - strand, within EX28DRAFT_0801 at 801.563 kb on + strand, within EX28DRAFT_0801 at 801.618 kb on - strand, within EX28DRAFT_0801 at 801.816 kb on - strand, within EX28DRAFT_0801 at 801.816 kb on - strand, within EX28DRAFT_0801 at 801.958 kb on + strand, within EX28DRAFT_0801 at 801.990 kb on + strand, within EX28DRAFT_0801 at 801.991 kb on - strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.142 kb on + strand at 802.305 kb on - strand, within EX28DRAFT_0802 at 802.418 kb on + strand, within EX28DRAFT_0802 at 802.418 kb on + strand, within EX28DRAFT_0802 at 802.424 kb on + strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.803 kb on + strand, within EX28DRAFT_0802 at 802.803 kb on + strand, within EX28DRAFT_0802 at 802.804 kb on - strand, within EX28DRAFT_0802 at 802.804 kb on - strand, within EX28DRAFT_0802 at 802.935 kb on + strand, within EX28DRAFT_0802 at 803.031 kb on - strand, within EX28DRAFT_0802
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 800,843 + EX28DRAFT_0800 0.71 +0.6 801,012 - EX28DRAFT_0800 0.81 -2.0 801,120 - EX28DRAFT_0800 0.87 -0.2 801,226 - -0.1 801,294 + +0.2 801,421 - -0.7 801,511 + EX28DRAFT_0801 0.21 -0.8 801,512 - EX28DRAFT_0801 0.21 -2.6 801,512 - EX28DRAFT_0801 0.21 +0.7 801,563 + EX28DRAFT_0801 0.27 -0.9 801,618 - EX28DRAFT_0801 0.34 -4.1 801,816 - EX28DRAFT_0801 0.59 +0.6 801,816 - EX28DRAFT_0801 0.59 +0.4 801,958 + EX28DRAFT_0801 0.77 -1.1 801,990 + EX28DRAFT_0801 0.81 +0.4 801,991 - EX28DRAFT_0801 0.81 -0.3 802,046 + EX28DRAFT_0801 0.88 -0.9 802,046 + EX28DRAFT_0801 0.88 -0.9 802,046 + EX28DRAFT_0801 0.88 +1.1 802,046 + EX28DRAFT_0801 0.88 -0.8 802,047 - EX28DRAFT_0801 0.88 -0.3 802,047 - EX28DRAFT_0801 0.88 -0.2 802,047 - EX28DRAFT_0801 0.88 +0.4 802,047 - EX28DRAFT_0801 0.88 -0.5 802,142 + -0.1 802,305 - EX28DRAFT_0802 0.14 +1.1 802,418 + EX28DRAFT_0802 0.26 -0.8 802,418 + EX28DRAFT_0802 0.26 +0.6 802,424 + EX28DRAFT_0802 0.26 +1.1 802,425 - EX28DRAFT_0802 0.26 +0.7 802,425 - EX28DRAFT_0802 0.26 +0.5 802,425 - EX28DRAFT_0802 0.26 -0.3 802,803 + EX28DRAFT_0802 0.64 +5.5 802,803 + EX28DRAFT_0802 0.64 +0.3 802,804 - EX28DRAFT_0802 0.64 -0.6 802,804 - EX28DRAFT_0802 0.64 +0.3 802,935 + EX28DRAFT_0802 0.77 -1.2 803,031 - EX28DRAFT_0802 0.87 +1.4
Or see this region's nucleotide sequence