Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0778 and EX28DRAFT_0779 overlap by 1 nucleotides EX28DRAFT_0779 and EX28DRAFT_0780 are separated by 281 nucleotides EX28DRAFT_0780 and EX28DRAFT_0781 are separated by 78 nucleotides
EX28DRAFT_0778: EX28DRAFT_0778 - hypothetical protein, at 776,614 to 776,835
_0778
EX28DRAFT_0779: EX28DRAFT_0779 - hypothetical protein, at 776,835 to 777,539
_0779
EX28DRAFT_0780: EX28DRAFT_0780 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 777,821 to 778,831
_0780
EX28DRAFT_0781: EX28DRAFT_0781 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 778,910 to 779,890
_0781
Position (kb) 777
778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 776.850 kb on - strand at 776.890 kb on - strand at 776.894 kb on + strand at 776.936 kb on - strand, within EX28DRAFT_0779 at 777.055 kb on - strand, within EX28DRAFT_0779 at 777.133 kb on + strand, within EX28DRAFT_0779 at 777.184 kb on + strand, within EX28DRAFT_0779 at 777.205 kb on - strand, within EX28DRAFT_0779 at 777.303 kb on - strand, within EX28DRAFT_0779 at 777.753 kb on + strand at 777.772 kb on - strand at 777.822 kb on + strand at 777.823 kb on - strand at 778.015 kb on + strand, within EX28DRAFT_0780 at 778.057 kb on + strand, within EX28DRAFT_0780 at 778.290 kb on + strand, within EX28DRAFT_0780 at 778.290 kb on + strand, within EX28DRAFT_0780 at 778.291 kb on - strand, within EX28DRAFT_0780 at 778.416 kb on + strand, within EX28DRAFT_0780 at 778.416 kb on + strand, within EX28DRAFT_0780 at 778.507 kb on + strand, within EX28DRAFT_0780 at 778.507 kb on + strand, within EX28DRAFT_0780 at 778.508 kb on - strand, within EX28DRAFT_0780 at 778.609 kb on + strand, within EX28DRAFT_0780 at 778.720 kb on + strand, within EX28DRAFT_0780 at 778.817 kb on - strand at 778.844 kb on - strand at 778.993 kb on + strand at 778.994 kb on - strand at 778.994 kb on - strand at 779.304 kb on + strand, within EX28DRAFT_0781 at 779.304 kb on + strand, within EX28DRAFT_0781 at 779.305 kb on - strand, within EX28DRAFT_0781 at 779.305 kb on - strand, within EX28DRAFT_0781 at 779.428 kb on + strand, within EX28DRAFT_0781 at 779.428 kb on + strand, within EX28DRAFT_0781 at 779.429 kb on - strand, within EX28DRAFT_0781 at 779.430 kb on + strand, within EX28DRAFT_0781 at 779.430 kb on + strand, within EX28DRAFT_0781 at 779.431 kb on - strand, within EX28DRAFT_0781 at 779.431 kb on - strand, within EX28DRAFT_0781 at 779.560 kb on + strand, within EX28DRAFT_0781 at 779.653 kb on + strand, within EX28DRAFT_0781 at 779.698 kb on - strand, within EX28DRAFT_0781
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 776,850 - -2.7 776,890 - +0.0 776,894 + -0.1 776,936 - EX28DRAFT_0779 0.14 -1.6 777,055 - EX28DRAFT_0779 0.31 +2.1 777,133 + EX28DRAFT_0779 0.42 -0.7 777,184 + EX28DRAFT_0779 0.50 -2.9 777,205 - EX28DRAFT_0779 0.52 -1.1 777,303 - EX28DRAFT_0779 0.66 -1.0 777,753 + -0.5 777,772 - -0.0 777,822 + -1.1 777,823 - +0.7 778,015 + EX28DRAFT_0780 0.19 -1.1 778,057 + EX28DRAFT_0780 0.23 -0.6 778,290 + EX28DRAFT_0780 0.46 +0.3 778,290 + EX28DRAFT_0780 0.46 +0.2 778,291 - EX28DRAFT_0780 0.46 +0.3 778,416 + EX28DRAFT_0780 0.59 -1.0 778,416 + EX28DRAFT_0780 0.59 +0.7 778,507 + EX28DRAFT_0780 0.68 +0.6 778,507 + EX28DRAFT_0780 0.68 -3.6 778,508 - EX28DRAFT_0780 0.68 +0.6 778,609 + EX28DRAFT_0780 0.78 -0.8 778,720 + EX28DRAFT_0780 0.89 +0.4 778,817 - +1.6 778,844 - -3.6 778,993 + +0.1 778,994 - +0.7 778,994 - -1.8 779,304 + EX28DRAFT_0781 0.40 -0.5 779,304 + EX28DRAFT_0781 0.40 -0.6 779,305 - EX28DRAFT_0781 0.40 -2.1 779,305 - EX28DRAFT_0781 0.40 +1.2 779,428 + EX28DRAFT_0781 0.53 -0.0 779,428 + EX28DRAFT_0781 0.53 +1.0 779,429 - EX28DRAFT_0781 0.53 +0.4 779,430 + EX28DRAFT_0781 0.53 -0.0 779,430 + EX28DRAFT_0781 0.53 +0.4 779,431 - EX28DRAFT_0781 0.53 +0.5 779,431 - EX28DRAFT_0781 0.53 -1.6 779,560 + EX28DRAFT_0781 0.66 -0.0 779,653 + EX28DRAFT_0781 0.76 -0.0 779,698 - EX28DRAFT_0781 0.80 -1.0
Or see this region's nucleotide sequence