Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0755 and EX28DRAFT_0756 are separated by 75 nucleotides EX28DRAFT_0756 and EX28DRAFT_0757 are separated by 3 nucleotides EX28DRAFT_0757 and EX28DRAFT_0758 are separated by 23 nucleotides
EX28DRAFT_0755: EX28DRAFT_0755 - ribonuclease D, at 752,753 to 753,880
_0755
EX28DRAFT_0756: EX28DRAFT_0756 - cell division topological specificity factor MinE, at 753,956 to 754,225
_0756
EX28DRAFT_0757: EX28DRAFT_0757 - septum site-determining protein MinD, at 754,229 to 755,041
_0757
EX28DRAFT_0758: EX28DRAFT_0758 - septum site-determining protein MinC, at 755,065 to 755,772
_0758
Position (kb) 753
754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 752.985 kb on - strand, within EX28DRAFT_0755 at 753.126 kb on - strand, within EX28DRAFT_0755 at 753.127 kb on + strand, within EX28DRAFT_0755 at 753.204 kb on - strand, within EX28DRAFT_0755 at 753.224 kb on + strand, within EX28DRAFT_0755 at 753.383 kb on - strand, within EX28DRAFT_0755 at 753.501 kb on - strand, within EX28DRAFT_0755 at 753.502 kb on + strand, within EX28DRAFT_0755 at 753.853 kb on + strand at 753.901 kb on - strand at 753.910 kb on - strand at 754.352 kb on - strand, within EX28DRAFT_0757 at 754.427 kb on - strand, within EX28DRAFT_0757 at 754.791 kb on + strand, within EX28DRAFT_0757 at 754.859 kb on + strand, within EX28DRAFT_0757 at 755.030 kb on - strand at 755.206 kb on + strand, within EX28DRAFT_0758
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 752,985 - EX28DRAFT_0755 0.21 -2.3 753,126 - EX28DRAFT_0755 0.33 -2.5 753,127 + EX28DRAFT_0755 0.33 -1.3 753,204 - EX28DRAFT_0755 0.40 -3.0 753,224 + EX28DRAFT_0755 0.42 -2.7 753,383 - EX28DRAFT_0755 0.56 -2.0 753,501 - EX28DRAFT_0755 0.66 -1.2 753,502 + EX28DRAFT_0755 0.66 -2.2 753,853 + +0.3 753,901 - +0.2 753,910 - -0.3 754,352 - EX28DRAFT_0757 0.15 -0.6 754,427 - EX28DRAFT_0757 0.24 -1.2 754,791 + EX28DRAFT_0757 0.69 +0.5 754,859 + EX28DRAFT_0757 0.77 +1.7 755,030 - -0.6 755,206 + EX28DRAFT_0758 0.20 +1.7
Or see this region's nucleotide sequence