Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0753 and EX28DRAFT_0754 overlap by 42 nucleotides EX28DRAFT_0754 and EX28DRAFT_0755 are separated by 26 nucleotides EX28DRAFT_0755 and EX28DRAFT_0756 are separated by 75 nucleotides EX28DRAFT_0756 and EX28DRAFT_0757 are separated by 3 nucleotides
EX28DRAFT_0753: EX28DRAFT_0753 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 750,963 to 752,681
_0753
EX28DRAFT_0754: EX28DRAFT_0754 - RNA, at 752,640 to 752,726
_0754
EX28DRAFT_0755: EX28DRAFT_0755 - ribonuclease D, at 752,753 to 753,880
_0755
EX28DRAFT_0756: EX28DRAFT_0756 - cell division topological specificity factor MinE, at 753,956 to 754,225
_0756
EX28DRAFT_0757: EX28DRAFT_0757 - septum site-determining protein MinD, at 754,229 to 755,041
_0757
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 751.772 kb on - strand, within EX28DRAFT_0753 at 751.772 kb on - strand, within EX28DRAFT_0753 at 751.772 kb on - strand, within EX28DRAFT_0753 at 751.811 kb on + strand, within EX28DRAFT_0753 at 751.812 kb on - strand, within EX28DRAFT_0753 at 752.050 kb on - strand, within EX28DRAFT_0753 at 752.050 kb on - strand, within EX28DRAFT_0753 at 752.247 kb on + strand, within EX28DRAFT_0753 at 752.418 kb on - strand, within EX28DRAFT_0753 at 752.491 kb on + strand, within EX28DRAFT_0753 at 752.492 kb on - strand, within EX28DRAFT_0753 at 752.492 kb on - strand, within EX28DRAFT_0753 at 752.492 kb on - strand, within EX28DRAFT_0753 at 752.492 kb on - strand, within EX28DRAFT_0753 at 752.641 kb on + strand at 752.642 kb on - strand at 752.665 kb on + strand at 752.672 kb on + strand at 752.673 kb on - strand at 752.865 kb on - strand at 752.892 kb on - strand, within EX28DRAFT_0755 at 752.899 kb on + strand, within EX28DRAFT_0755 at 752.985 kb on - strand, within EX28DRAFT_0755 at 753.126 kb on - strand, within EX28DRAFT_0755 at 753.127 kb on + strand, within EX28DRAFT_0755 at 753.204 kb on - strand, within EX28DRAFT_0755 at 753.224 kb on + strand, within EX28DRAFT_0755 at 753.383 kb on - strand, within EX28DRAFT_0755 at 753.501 kb on - strand, within EX28DRAFT_0755 at 753.502 kb on + strand, within EX28DRAFT_0755 at 753.853 kb on + strand at 753.901 kb on - strand at 753.910 kb on - strand at 754.352 kb on - strand, within EX28DRAFT_0757 at 754.427 kb on - strand, within EX28DRAFT_0757 at 754.791 kb on + strand, within EX28DRAFT_0757 at 754.859 kb on + strand, within EX28DRAFT_0757
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 751,772 - EX28DRAFT_0753 0.47 -0.1 751,772 - EX28DRAFT_0753 0.47 -0.3 751,772 - EX28DRAFT_0753 0.47 +1.4 751,811 + EX28DRAFT_0753 0.49 +0.9 751,812 - EX28DRAFT_0753 0.49 +1.0 752,050 - EX28DRAFT_0753 0.63 -0.8 752,050 - EX28DRAFT_0753 0.63 -0.4 752,247 + EX28DRAFT_0753 0.75 +0.4 752,418 - EX28DRAFT_0753 0.85 +0.3 752,491 + EX28DRAFT_0753 0.89 -1.1 752,492 - EX28DRAFT_0753 0.89 +0.7 752,492 - EX28DRAFT_0753 0.89 -0.9 752,492 - EX28DRAFT_0753 0.89 +0.3 752,492 - EX28DRAFT_0753 0.89 -2.0 752,641 + +0.1 752,642 - -0.4 752,665 + +0.1 752,672 + -1.4 752,673 - -2.2 752,865 - -1.5 752,892 - EX28DRAFT_0755 0.12 -1.2 752,899 + EX28DRAFT_0755 0.13 -2.4 752,985 - EX28DRAFT_0755 0.21 -2.3 753,126 - EX28DRAFT_0755 0.33 -2.5 753,127 + EX28DRAFT_0755 0.33 -1.3 753,204 - EX28DRAFT_0755 0.40 -3.0 753,224 + EX28DRAFT_0755 0.42 -2.7 753,383 - EX28DRAFT_0755 0.56 -2.0 753,501 - EX28DRAFT_0755 0.66 -1.2 753,502 + EX28DRAFT_0755 0.66 -2.2 753,853 + +0.3 753,901 - +0.2 753,910 - -0.3 754,352 - EX28DRAFT_0757 0.15 -0.6 754,427 - EX28DRAFT_0757 0.24 -1.2 754,791 + EX28DRAFT_0757 0.69 +0.5 754,859 + EX28DRAFT_0757 0.77 +1.7
Or see this region's nucleotide sequence