Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0713 and EX28DRAFT_0714 are separated by 1 nucleotides EX28DRAFT_0714 and EX28DRAFT_0715 are separated by 16 nucleotides EX28DRAFT_0715 and EX28DRAFT_0716 are separated by 101 nucleotides EX28DRAFT_0716 and EX28DRAFT_0717 are separated by 193 nucleotides
EX28DRAFT_0713: EX28DRAFT_0713 - Uncharacterized protein, homolog of Cu resistance protein CopC, at 712,095 to 712,466
_0713
EX28DRAFT_0714: EX28DRAFT_0714 - Putative copper export protein, at 712,468 to 713,337
_0714
EX28DRAFT_0715: EX28DRAFT_0715 - Protein of unknown function (DUF2511), at 713,354 to 713,692
_0715
EX28DRAFT_0716: EX28DRAFT_0716 - RNA, at 713,794 to 713,938
_0716
EX28DRAFT_0717: EX28DRAFT_0717 - Glycosyltransferase family 17, at 714,132 to 715,028
_0717
Position (kb) 713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 712.430 kb on + strand at 712.431 kb on - strand at 712.447 kb on - strand at 712.464 kb on + strand at 712.464 kb on + strand at 712.465 kb on - strand at 712.483 kb on + strand at 712.501 kb on - strand at 712.911 kb on + strand, within EX28DRAFT_0714 at 712.911 kb on + strand, within EX28DRAFT_0714 at 712.912 kb on - strand, within EX28DRAFT_0714 at 712.916 kb on - strand, within EX28DRAFT_0714 at 713.085 kb on - strand, within EX28DRAFT_0714 at 713.099 kb on + strand, within EX28DRAFT_0714 at 713.181 kb on - strand, within EX28DRAFT_0714 at 713.344 kb on + strand at 713.345 kb on - strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.349 kb on - strand at 713.349 kb on - strand at 713.368 kb on - strand at 713.379 kb on + strand at 713.513 kb on + strand, within EX28DRAFT_0715 at 713.611 kb on + strand, within EX28DRAFT_0715 at 713.611 kb on + strand, within EX28DRAFT_0715 at 713.753 kb on + strand at 713.753 kb on + strand at 713.754 kb on - strand at 713.821 kb on - strand, within EX28DRAFT_0716 at 713.843 kb on + strand, within EX28DRAFT_0716 at 713.941 kb on - strand at 713.974 kb on - strand at 714.025 kb on + strand at 714.025 kb on + strand at 714.025 kb on + strand at 714.026 kb on - strand at 714.129 kb on - strand at 714.129 kb on - strand at 714.129 kb on - strand at 714.129 kb on - strand at 714.133 kb on + strand at 714.133 kb on + strand at 714.176 kb on - strand at 714.176 kb on - strand at 714.313 kb on - strand, within EX28DRAFT_0717 at 714.555 kb on - strand, within EX28DRAFT_0717 at 714.555 kb on - strand, within EX28DRAFT_0717
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 712,430 + -0.4 712,431 - -0.7 712,447 - +0.2 712,464 + +0.3 712,464 + +0.4 712,465 - +3.7 712,483 + -0.2 712,501 - -2.1 712,911 + EX28DRAFT_0714 0.51 +1.1 712,911 + EX28DRAFT_0714 0.51 +0.2 712,912 - EX28DRAFT_0714 0.51 -0.5 712,916 - EX28DRAFT_0714 0.51 +0.1 713,085 - EX28DRAFT_0714 0.71 +0.7 713,099 + EX28DRAFT_0714 0.73 -0.0 713,181 - EX28DRAFT_0714 0.82 +0.7 713,344 + -0.8 713,345 - -2.1 713,348 + -0.6 713,348 + -2.8 713,348 + -0.3 713,348 + +2.9 713,349 - +1.0 713,349 - -0.4 713,368 - +0.6 713,379 + -0.0 713,513 + EX28DRAFT_0715 0.47 -1.4 713,611 + EX28DRAFT_0715 0.76 +0.2 713,611 + EX28DRAFT_0715 0.76 -2.3 713,753 + +0.9 713,753 + -0.1 713,754 - +0.4 713,821 - EX28DRAFT_0716 0.19 +0.2 713,843 + EX28DRAFT_0716 0.34 -0.5 713,941 - -0.9 713,974 - +0.8 714,025 + +1.5 714,025 + -2.3 714,025 + -1.9 714,026 - +1.9 714,129 - -0.8 714,129 - +0.1 714,129 - -0.4 714,129 - -0.3 714,133 + +0.4 714,133 + +0.2 714,176 - +0.1 714,176 - +0.3 714,313 - EX28DRAFT_0717 0.20 +0.5 714,555 - EX28DRAFT_0717 0.47 +0.7 714,555 - EX28DRAFT_0717 0.47 +0.9
Or see this region's nucleotide sequence