Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0710

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0709 and EX28DRAFT_0710 overlap by 4 nucleotidesEX28DRAFT_0710 and EX28DRAFT_0711 are separated by 24 nucleotidesEX28DRAFT_0711 and EX28DRAFT_0712 are separated by 110 nucleotides EX28DRAFT_0709: EX28DRAFT_0709 - Protease II, at 708,223 to 710,283 _0709 EX28DRAFT_0710: EX28DRAFT_0710 - DNA polymerase III, epsilon subunit and related 3'-5' exonucleases, at 710,280 to 710,942 _0710 EX28DRAFT_0711: EX28DRAFT_0711 - Predicted amidohydrolase, at 710,967 to 711,617 _0711 EX28DRAFT_0712: EX28DRAFT_0712 - DNA polymerase III, theta subunit, at 711,728 to 711,958 _0712 Position (kb) 710 711Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 709.440 kb on - strand, within EX28DRAFT_0709at 709.585 kb on + strand, within EX28DRAFT_0709at 709.585 kb on + strand, within EX28DRAFT_0709at 709.625 kb on + strand, within EX28DRAFT_0709at 709.984 kb on + strand, within EX28DRAFT_0709at 709.984 kb on + strand, within EX28DRAFT_0709at 709.984 kb on + strand, within EX28DRAFT_0709at 709.985 kb on - strand, within EX28DRAFT_0709at 709.994 kb on - strand, within EX28DRAFT_0709at 710.047 kb on - strand, within EX28DRAFT_0709at 710.086 kb on + strandat 710.207 kb on - strandat 710.237 kb on + strandat 710.238 kb on - strandat 710.297 kb on - strandat 710.297 kb on - strandat 710.347 kb on + strand, within EX28DRAFT_0710at 710.348 kb on - strand, within EX28DRAFT_0710at 710.348 kb on - strand, within EX28DRAFT_0710at 710.358 kb on + strand, within EX28DRAFT_0710at 710.359 kb on - strand, within EX28DRAFT_0710at 710.359 kb on - strand, within EX28DRAFT_0710at 710.363 kb on - strand, within EX28DRAFT_0710at 710.420 kb on + strand, within EX28DRAFT_0710at 710.486 kb on + strand, within EX28DRAFT_0710at 710.486 kb on + strand, within EX28DRAFT_0710at 710.486 kb on + strand, within EX28DRAFT_0710at 710.487 kb on - strand, within EX28DRAFT_0710at 710.520 kb on - strand, within EX28DRAFT_0710at 710.521 kb on + strand, within EX28DRAFT_0710at 710.521 kb on + strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.522 kb on - strand, within EX28DRAFT_0710at 710.531 kb on - strand, within EX28DRAFT_0710at 710.591 kb on - strand, within EX28DRAFT_0710at 710.612 kb on + strand, within EX28DRAFT_0710at 710.713 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.729 kb on - strand, within EX28DRAFT_0710at 710.731 kb on + strand, within EX28DRAFT_0710at 710.732 kb on - strand, within EX28DRAFT_0710at 710.732 kb on - strand, within EX28DRAFT_0710at 710.895 kb on + strandat 710.974 kb on - strandat 711.121 kb on + strand, within EX28DRAFT_0711at 711.121 kb on + strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.125 kb on + strand, within EX28DRAFT_0711at 711.126 kb on - strand, within EX28DRAFT_0711at 711.252 kb on - strand, within EX28DRAFT_0711at 711.252 kb on - strand, within EX28DRAFT_0711at 711.399 kb on + strand, within EX28DRAFT_0711at 711.453 kb on + strand, within EX28DRAFT_0711at 711.552 kb on - strand, within EX28DRAFT_0711at 711.552 kb on - strand, within EX28DRAFT_0711at 711.565 kb on - strandat 711.565 kb on - strandat 711.587 kb on - strandat 711.587 kb on - strandat 711.601 kb on - strandat 711.629 kb on + strandat 711.631 kb on + strandat 711.631 kb on + strandat 711.631 kb on + strandat 711.652 kb on - strandat 711.657 kb on + strandat 711.658 kb on - strandat 711.729 kb on + strandat 711.730 kb on - strandat 711.747 kb on + strandat 711.867 kb on + strand, within EX28DRAFT_0712at 711.868 kb on - strand, within EX28DRAFT_0712

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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709,440 - EX28DRAFT_0709 0.59 +0.4
709,585 + EX28DRAFT_0709 0.66 -0.1
709,585 + EX28DRAFT_0709 0.66 -0.1
709,625 + EX28DRAFT_0709 0.68 +1.1
709,984 + EX28DRAFT_0709 0.85 -3.1
709,984 + EX28DRAFT_0709 0.85 +0.4
709,984 + EX28DRAFT_0709 0.85 -3.6
709,985 - EX28DRAFT_0709 0.85 +1.2
709,994 - EX28DRAFT_0709 0.86 +0.1
710,047 - EX28DRAFT_0709 0.89 -0.5
710,086 + +0.2
710,207 - +1.7
710,237 + -3.3
710,238 - -1.5
710,297 - +1.5
710,297 - -0.9
710,347 + EX28DRAFT_0710 0.10 -0.5
710,348 - EX28DRAFT_0710 0.10 +0.2
710,348 - EX28DRAFT_0710 0.10 -1.4
710,358 + EX28DRAFT_0710 0.12 -1.2
710,359 - EX28DRAFT_0710 0.12 -1.7
710,359 - EX28DRAFT_0710 0.12 -0.2
710,363 - EX28DRAFT_0710 0.13 +0.1
710,420 + EX28DRAFT_0710 0.21 -1.8
710,486 + EX28DRAFT_0710 0.31 +1.2
710,486 + EX28DRAFT_0710 0.31 -1.0
710,486 + EX28DRAFT_0710 0.31 -3.9
710,487 - EX28DRAFT_0710 0.31 -0.0
710,520 - EX28DRAFT_0710 0.36 -1.0
710,521 + EX28DRAFT_0710 0.36 +1.3
710,521 + EX28DRAFT_0710 0.36 -1.3
710,522 - EX28DRAFT_0710 0.37 -0.7
710,522 - EX28DRAFT_0710 0.37 -1.3
710,522 - EX28DRAFT_0710 0.37 +0.1
710,522 - EX28DRAFT_0710 0.37 -0.7
710,531 - EX28DRAFT_0710 0.38 -0.3
710,591 - EX28DRAFT_0710 0.47 -0.1
710,612 + EX28DRAFT_0710 0.50 +1.9
710,713 + EX28DRAFT_0710 0.65 +0.5
710,728 + EX28DRAFT_0710 0.68 +0.0
710,728 + EX28DRAFT_0710 0.68 -1.3
710,728 + EX28DRAFT_0710 0.68 +0.4
710,729 - EX28DRAFT_0710 0.68 -2.7
710,731 + EX28DRAFT_0710 0.68 -0.8
710,732 - EX28DRAFT_0710 0.68 -2.2
710,732 - EX28DRAFT_0710 0.68 +0.9
710,895 + +0.2
710,974 - -0.1
711,121 + EX28DRAFT_0711 0.24 +1.2
711,121 + EX28DRAFT_0711 0.24 -0.9
711,122 - EX28DRAFT_0711 0.24 +0.7
711,122 - EX28DRAFT_0711 0.24 -3.5
711,122 - EX28DRAFT_0711 0.24 +0.3
711,125 + EX28DRAFT_0711 0.24 +1.1
711,126 - EX28DRAFT_0711 0.24 -1.6
711,252 - EX28DRAFT_0711 0.44 +0.4
711,252 - EX28DRAFT_0711 0.44 -0.9
711,399 + EX28DRAFT_0711 0.66 +0.3
711,453 + EX28DRAFT_0711 0.75 -0.7
711,552 - EX28DRAFT_0711 0.90 -0.3
711,552 - EX28DRAFT_0711 0.90 -0.7
711,565 - -1.2
711,565 - -0.7
711,587 - -1.3
711,587 - +0.2
711,601 - +0.7
711,629 + +0.5
711,631 + -0.7
711,631 + +0.1
711,631 + -0.1
711,652 - +0.9
711,657 + +0.1
711,658 - +0.5
711,729 + -1.3
711,730 - +2.7
711,747 + -1.3
711,867 + EX28DRAFT_0712 0.60 +0.3
711,868 - EX28DRAFT_0712 0.61 -0.8

Or see this region's nucleotide sequence