Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0708

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0707 and EX28DRAFT_0708 are separated by 170 nucleotidesEX28DRAFT_0708 and EX28DRAFT_0709 are separated by 85 nucleotides EX28DRAFT_0707: EX28DRAFT_0707 - formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-), at 706,141 to 707,319 _0707 EX28DRAFT_0708: EX28DRAFT_0708 - Uncharacterized protein conserved in bacteria, at 707,490 to 708,137 _0708 EX28DRAFT_0709: EX28DRAFT_0709 - Protease II, at 708,223 to 710,283 _0709 Position (kb) 707 708 709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 706.818 kb on + strand, within EX28DRAFT_0707at 706.819 kb on - strand, within EX28DRAFT_0707at 707.106 kb on + strand, within EX28DRAFT_0707at 707.150 kb on + strand, within EX28DRAFT_0707at 707.151 kb on - strand, within EX28DRAFT_0707at 707.151 kb on - strand, within EX28DRAFT_0707at 707.219 kb on - strandat 707.320 kb on - strandat 707.475 kb on + strandat 707.643 kb on + strand, within EX28DRAFT_0708at 707.649 kb on - strand, within EX28DRAFT_0708at 707.706 kb on + strand, within EX28DRAFT_0708at 707.831 kb on + strand, within EX28DRAFT_0708at 707.832 kb on - strand, within EX28DRAFT_0708at 707.920 kb on + strand, within EX28DRAFT_0708at 707.921 kb on - strand, within EX28DRAFT_0708at 707.989 kb on - strand, within EX28DRAFT_0708at 708.045 kb on - strand, within EX28DRAFT_0708at 708.192 kb on + strandat 708.193 kb on - strandat 708.193 kb on - strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.194 kb on + strandat 708.195 kb on - strandat 708.195 kb on - strandat 708.202 kb on - strandat 708.243 kb on + strandat 708.289 kb on + strandat 708.289 kb on + strandat 708.289 kb on + strandat 708.289 kb on + strandat 708.290 kb on - strandat 708.290 kb on - strandat 708.505 kb on + strand, within EX28DRAFT_0709at 708.506 kb on - strand, within EX28DRAFT_0709at 708.601 kb on + strand, within EX28DRAFT_0709at 708.603 kb on + strand, within EX28DRAFT_0709at 708.662 kb on - strand, within EX28DRAFT_0709at 708.662 kb on - strand, within EX28DRAFT_0709at 708.781 kb on + strand, within EX28DRAFT_0709at 708.781 kb on + strand, within EX28DRAFT_0709at 708.782 kb on - strand, within EX28DRAFT_0709at 708.782 kb on - strand, within EX28DRAFT_0709at 708.835 kb on - strand, within EX28DRAFT_0709at 708.835 kb on - strand, within EX28DRAFT_0709at 708.871 kb on + strand, within EX28DRAFT_0709at 708.872 kb on - strand, within EX28DRAFT_0709at 708.895 kb on + strand, within EX28DRAFT_0709at 708.895 kb on + strand, within EX28DRAFT_0709at 708.896 kb on - strand, within EX28DRAFT_0709at 708.896 kb on - strand, within EX28DRAFT_0709at 708.929 kb on - strand, within EX28DRAFT_0709at 708.929 kb on - strand, within EX28DRAFT_0709at 708.929 kb on - strand, within EX28DRAFT_0709at 708.936 kb on + strand, within EX28DRAFT_0709at 708.936 kb on + strand, within EX28DRAFT_0709at 708.937 kb on - strand, within EX28DRAFT_0709at 708.937 kb on - strand, within EX28DRAFT_0709at 709.069 kb on + strand, within EX28DRAFT_0709at 709.108 kb on + strand, within EX28DRAFT_0709at 709.110 kb on + strand, within EX28DRAFT_0709

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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706,818 + EX28DRAFT_0707 0.57 +0.8
706,819 - EX28DRAFT_0707 0.58 +0.4
707,106 + EX28DRAFT_0707 0.82 -0.0
707,150 + EX28DRAFT_0707 0.86 -0.8
707,151 - EX28DRAFT_0707 0.86 +0.3
707,151 - EX28DRAFT_0707 0.86 +1.7
707,219 - -0.7
707,320 - -1.1
707,475 + -2.1
707,643 + EX28DRAFT_0708 0.24 +0.4
707,649 - EX28DRAFT_0708 0.25 -1.3
707,706 + EX28DRAFT_0708 0.33 -1.0
707,831 + EX28DRAFT_0708 0.53 +0.3
707,832 - EX28DRAFT_0708 0.53 +0.0
707,920 + EX28DRAFT_0708 0.66 -0.9
707,921 - EX28DRAFT_0708 0.67 +1.2
707,989 - EX28DRAFT_0708 0.77 +0.0
708,045 - EX28DRAFT_0708 0.86 -0.5
708,192 + -1.1
708,193 - +0.5
708,193 - +0.6
708,194 + -1.8
708,194 + +0.9
708,194 + +0.2
708,194 + -1.8
708,194 + -0.8
708,194 + -2.3
708,195 - -0.6
708,195 - -1.2
708,202 - +0.3
708,243 + -1.0
708,289 + -2.8
708,289 + +0.2
708,289 + -0.0
708,289 + -0.0
708,290 - +0.0
708,290 - -2.1
708,505 + EX28DRAFT_0709 0.14 +0.6
708,506 - EX28DRAFT_0709 0.14 -0.4
708,601 + EX28DRAFT_0709 0.18 +0.4
708,603 + EX28DRAFT_0709 0.18 +0.9
708,662 - EX28DRAFT_0709 0.21 -0.5
708,662 - EX28DRAFT_0709 0.21 -4.4
708,781 + EX28DRAFT_0709 0.27 +0.4
708,781 + EX28DRAFT_0709 0.27 +1.3
708,782 - EX28DRAFT_0709 0.27 -0.7
708,782 - EX28DRAFT_0709 0.27 +0.6
708,835 - EX28DRAFT_0709 0.30 -1.8
708,835 - EX28DRAFT_0709 0.30 +1.7
708,871 + EX28DRAFT_0709 0.31 +0.9
708,872 - EX28DRAFT_0709 0.31 -2.1
708,895 + EX28DRAFT_0709 0.33 +1.6
708,895 + EX28DRAFT_0709 0.33 -0.3
708,896 - EX28DRAFT_0709 0.33 -0.6
708,896 - EX28DRAFT_0709 0.33 +1.4
708,929 - EX28DRAFT_0709 0.34 -0.3
708,929 - EX28DRAFT_0709 0.34 -0.0
708,929 - EX28DRAFT_0709 0.34 +0.8
708,936 + EX28DRAFT_0709 0.35 +0.9
708,936 + EX28DRAFT_0709 0.35 +1.0
708,937 - EX28DRAFT_0709 0.35 +0.2
708,937 - EX28DRAFT_0709 0.35 +1.2
709,069 + EX28DRAFT_0709 0.41 +1.4
709,108 + EX28DRAFT_0709 0.43 -0.5
709,110 + EX28DRAFT_0709 0.43 +0.1

Or see this region's nucleotide sequence