Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0662 and EX28DRAFT_0663 are separated by 19 nucleotides EX28DRAFT_0663 and EX28DRAFT_0664 are separated by 104 nucleotides
EX28DRAFT_0662: EX28DRAFT_0662 - Chemotaxis protein histidine kinase and related kinases, at 656,025 to 658,061
_0662
EX28DRAFT_0663: EX28DRAFT_0663 - Chemotaxis signal transduction protein, at 658,081 to 658,584
_0663
EX28DRAFT_0664: EX28DRAFT_0664 - Na+/H+-dicarboxylate symporters, at 658,689 to 659,954
_0664
Position (kb) 658
659 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 657.087 kb on + strand, within EX28DRAFT_0662 at 657.087 kb on + strand, within EX28DRAFT_0662 at 657.140 kb on + strand, within EX28DRAFT_0662 at 657.536 kb on + strand, within EX28DRAFT_0662 at 657.537 kb on - strand, within EX28DRAFT_0662 at 657.537 kb on - strand, within EX28DRAFT_0662 at 657.575 kb on + strand, within EX28DRAFT_0662 at 657.576 kb on - strand, within EX28DRAFT_0662 at 657.913 kb on + strand at 657.914 kb on - strand at 657.914 kb on - strand at 658.048 kb on - strand at 658.048 kb on - strand at 658.063 kb on + strand at 658.064 kb on - strand at 658.075 kb on - strand at 658.077 kb on + strand at 658.243 kb on - strand, within EX28DRAFT_0663 at 658.324 kb on + strand, within EX28DRAFT_0663 at 658.325 kb on - strand, within EX28DRAFT_0663 at 658.577 kb on + strand at 658.578 kb on - strand at 658.587 kb on - strand at 658.691 kb on - strand at 658.705 kb on - strand at 658.769 kb on + strand at 658.769 kb on + strand at 658.769 kb on + strand at 658.788 kb on - strand at 658.859 kb on + strand, within EX28DRAFT_0664 at 658.984 kb on + strand, within EX28DRAFT_0664 at 658.984 kb on + strand, within EX28DRAFT_0664 at 659.021 kb on - strand, within EX28DRAFT_0664 at 659.021 kb on - strand, within EX28DRAFT_0664 at 659.219 kb on - strand, within EX28DRAFT_0664 at 659.219 kb on - strand, within EX28DRAFT_0664 at 659.263 kb on + strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.287 kb on + strand, within EX28DRAFT_0664 at 659.288 kb on - strand, within EX28DRAFT_0664 at 659.362 kb on + strand, within EX28DRAFT_0664 at 659.362 kb on + strand, within EX28DRAFT_0664 at 659.363 kb on - strand, within EX28DRAFT_0664 at 659.363 kb on - strand, within EX28DRAFT_0664 at 659.363 kb on - strand, within EX28DRAFT_0664 at 659.372 kb on - strand, within EX28DRAFT_0664 at 659.394 kb on - strand, within EX28DRAFT_0664
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 657,087 + EX28DRAFT_0662 0.52 -0.8 657,087 + EX28DRAFT_0662 0.52 -1.0 657,140 + EX28DRAFT_0662 0.55 +0.5 657,536 + EX28DRAFT_0662 0.74 +1.7 657,537 - EX28DRAFT_0662 0.74 -1.0 657,537 - EX28DRAFT_0662 0.74 +2.7 657,575 + EX28DRAFT_0662 0.76 +0.2 657,576 - EX28DRAFT_0662 0.76 -1.4 657,913 + -0.1 657,914 - -1.4 657,914 - -1.1 658,048 - -1.3 658,048 - +4.3 658,063 + +0.0 658,064 - -0.5 658,075 - -1.4 658,077 + +0.0 658,243 - EX28DRAFT_0663 0.32 -0.4 658,324 + EX28DRAFT_0663 0.48 -1.4 658,325 - EX28DRAFT_0663 0.48 -2.1 658,577 + -1.1 658,578 - +1.6 658,587 - -0.2 658,691 - +0.7 658,705 - +0.8 658,769 + -0.6 658,769 + -0.6 658,769 + +1.0 658,788 - -0.9 658,859 + EX28DRAFT_0664 0.13 -0.2 658,984 + EX28DRAFT_0664 0.23 -1.0 658,984 + EX28DRAFT_0664 0.23 +0.2 659,021 - EX28DRAFT_0664 0.26 -0.2 659,021 - EX28DRAFT_0664 0.26 -4.3 659,219 - EX28DRAFT_0664 0.42 -0.0 659,219 - EX28DRAFT_0664 0.42 -1.9 659,263 + EX28DRAFT_0664 0.45 +0.7 659,264 - EX28DRAFT_0664 0.45 +0.2 659,264 - EX28DRAFT_0664 0.45 +0.2 659,264 - EX28DRAFT_0664 0.45 -0.7 659,264 - EX28DRAFT_0664 0.45 -0.8 659,264 - EX28DRAFT_0664 0.45 -1.2 659,287 + EX28DRAFT_0664 0.47 -1.0 659,288 - EX28DRAFT_0664 0.47 +0.6 659,362 + EX28DRAFT_0664 0.53 +0.9 659,362 + EX28DRAFT_0664 0.53 -0.8 659,363 - EX28DRAFT_0664 0.53 +0.4 659,363 - EX28DRAFT_0664 0.53 +0.1 659,363 - EX28DRAFT_0664 0.53 +0.2 659,372 - EX28DRAFT_0664 0.54 +0.4 659,394 - EX28DRAFT_0664 0.56 -0.5
Or see this region's nucleotide sequence