Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0637 and EX28DRAFT_0638 are separated by 11 nucleotides EX28DRAFT_0638 and EX28DRAFT_0639 are separated by 82 nucleotides EX28DRAFT_0639 and EX28DRAFT_0640 overlap by 4 nucleotides EX28DRAFT_0640 and EX28DRAFT_0641 overlap by 4 nucleotides
EX28DRAFT_0637: EX28DRAFT_0637 - tRNA, at 632,769 to 632,842
_0637
EX28DRAFT_0638: EX28DRAFT_0638 - tRNA, at 632,854 to 632,940
_0638
EX28DRAFT_0639: EX28DRAFT_0639 - ABC-type branched-chain amino acid transport systems, ATPase component, at 633,023 to 633,739
_0639
EX28DRAFT_0640: EX28DRAFT_0640 - ABC-type branched-chain amino acid transport systems, ATPase component, at 633,736 to 634,611
_0640
EX28DRAFT_0641: EX28DRAFT_0641 - ABC-type branched-chain amino acid transport system, permease component, at 634,608 to 635,885
_0641
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 632.967 kb on + strand at 632.967 kb on + strand at 633.118 kb on - strand, within EX28DRAFT_0639 at 633.118 kb on - strand, within EX28DRAFT_0639 at 633.118 kb on - strand, within EX28DRAFT_0639 at 633.514 kb on - strand, within EX28DRAFT_0639 at 633.514 kb on - strand, within EX28DRAFT_0639 at 633.514 kb on - strand, within EX28DRAFT_0639 at 633.514 kb on - strand, within EX28DRAFT_0639 at 633.526 kb on + strand, within EX28DRAFT_0639 at 633.535 kb on + strand, within EX28DRAFT_0639 at 633.740 kb on - strand at 633.826 kb on - strand, within EX28DRAFT_0640 at 633.899 kb on - strand, within EX28DRAFT_0640 at 633.902 kb on - strand, within EX28DRAFT_0640 at 633.936 kb on + strand, within EX28DRAFT_0640 at 633.952 kb on - strand, within EX28DRAFT_0640 at 634.164 kb on + strand, within EX28DRAFT_0640 at 634.203 kb on + strand, within EX28DRAFT_0640 at 634.203 kb on + strand, within EX28DRAFT_0640 at 634.204 kb on - strand, within EX28DRAFT_0640 at 634.351 kb on - strand, within EX28DRAFT_0640 at 634.419 kb on + strand, within EX28DRAFT_0640 at 634.420 kb on - strand, within EX28DRAFT_0640 at 634.424 kb on - strand, within EX28DRAFT_0640 at 634.424 kb on - strand, within EX28DRAFT_0640 at 634.448 kb on + strand, within EX28DRAFT_0640 at 634.449 kb on - strand, within EX28DRAFT_0640 at 634.468 kb on - strand, within EX28DRAFT_0640 at 634.528 kb on + strand at 634.558 kb on - strand at 634.594 kb on + strand at 634.595 kb on - strand at 634.790 kb on + strand, within EX28DRAFT_0641 at 634.791 kb on - strand, within EX28DRAFT_0641 at 634.791 kb on - strand, within EX28DRAFT_0641 at 634.876 kb on + strand, within EX28DRAFT_0641 at 634.876 kb on + strand, within EX28DRAFT_0641 at 634.956 kb on + strand, within EX28DRAFT_0641 at 634.957 kb on - strand, within EX28DRAFT_0641 at 635.039 kb on + strand, within EX28DRAFT_0641 at 635.044 kb on + strand, within EX28DRAFT_0641 at 635.045 kb on - strand, within EX28DRAFT_0641 at 635.045 kb on - strand, within EX28DRAFT_0641 at 635.045 kb on - strand, within EX28DRAFT_0641 at 635.084 kb on + strand, within EX28DRAFT_0641 at 635.085 kb on - strand, within EX28DRAFT_0641 at 635.090 kb on + strand, within EX28DRAFT_0641 at 635.111 kb on - strand, within EX28DRAFT_0641 at 635.291 kb on - strand, within EX28DRAFT_0641 at 635.392 kb on + strand, within EX28DRAFT_0641 at 635.444 kb on - strand, within EX28DRAFT_0641 at 635.506 kb on + strand, within EX28DRAFT_0641 at 635.506 kb on + strand, within EX28DRAFT_0641 at 635.506 kb on + strand, within EX28DRAFT_0641 at 635.539 kb on + strand, within EX28DRAFT_0641 at 635.539 kb on + strand, within EX28DRAFT_0641 at 635.540 kb on - strand, within EX28DRAFT_0641 at 635.588 kb on + strand, within EX28DRAFT_0641 at 635.589 kb on - strand, within EX28DRAFT_0641 at 635.589 kb on - strand, within EX28DRAFT_0641
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 632,967 + +1.1 632,967 + +0.4 633,118 - EX28DRAFT_0639 0.13 -1.9 633,118 - EX28DRAFT_0639 0.13 +1.8 633,118 - EX28DRAFT_0639 0.13 +1.0 633,514 - EX28DRAFT_0639 0.68 -1.0 633,514 - EX28DRAFT_0639 0.68 +0.5 633,514 - EX28DRAFT_0639 0.68 +1.1 633,514 - EX28DRAFT_0639 0.68 +0.0 633,526 + EX28DRAFT_0639 0.70 -1.2 633,535 + EX28DRAFT_0639 0.71 -0.7 633,740 - -0.7 633,826 - EX28DRAFT_0640 0.10 -0.4 633,899 - EX28DRAFT_0640 0.19 -0.9 633,902 - EX28DRAFT_0640 0.19 -0.2 633,936 + EX28DRAFT_0640 0.23 +0.7 633,952 - EX28DRAFT_0640 0.25 +2.8 634,164 + EX28DRAFT_0640 0.49 -0.2 634,203 + EX28DRAFT_0640 0.53 +0.6 634,203 + EX28DRAFT_0640 0.53 -0.2 634,204 - EX28DRAFT_0640 0.53 -0.3 634,351 - EX28DRAFT_0640 0.70 -0.8 634,419 + EX28DRAFT_0640 0.78 +1.2 634,420 - EX28DRAFT_0640 0.78 -1.6 634,424 - EX28DRAFT_0640 0.79 +2.2 634,424 - EX28DRAFT_0640 0.79 +7.6 634,448 + EX28DRAFT_0640 0.81 +0.9 634,449 - EX28DRAFT_0640 0.81 +0.9 634,468 - EX28DRAFT_0640 0.84 -0.4 634,528 + -0.8 634,558 - +2.4 634,594 + -0.5 634,595 - -0.0 634,790 + EX28DRAFT_0641 0.14 -0.7 634,791 - EX28DRAFT_0641 0.14 +0.1 634,791 - EX28DRAFT_0641 0.14 +1.0 634,876 + EX28DRAFT_0641 0.21 -1.4 634,876 + EX28DRAFT_0641 0.21 +0.6 634,956 + EX28DRAFT_0641 0.27 +0.2 634,957 - EX28DRAFT_0641 0.27 -0.6 635,039 + EX28DRAFT_0641 0.34 -0.5 635,044 + EX28DRAFT_0641 0.34 +0.6 635,045 - EX28DRAFT_0641 0.34 -1.7 635,045 - EX28DRAFT_0641 0.34 +0.7 635,045 - EX28DRAFT_0641 0.34 -1.4 635,084 + EX28DRAFT_0641 0.37 -0.7 635,085 - EX28DRAFT_0641 0.37 +2.5 635,090 + EX28DRAFT_0641 0.38 -0.8 635,111 - EX28DRAFT_0641 0.39 -0.1 635,291 - EX28DRAFT_0641 0.53 -1.2 635,392 + EX28DRAFT_0641 0.61 -0.8 635,444 - EX28DRAFT_0641 0.65 -1.0 635,506 + EX28DRAFT_0641 0.70 -0.8 635,506 + EX28DRAFT_0641 0.70 -2.0 635,506 + EX28DRAFT_0641 0.70 +1.0 635,539 + EX28DRAFT_0641 0.73 -1.3 635,539 + EX28DRAFT_0641 0.73 -1.3 635,540 - EX28DRAFT_0641 0.73 -0.8 635,588 + EX28DRAFT_0641 0.77 +0.8 635,589 - EX28DRAFT_0641 0.77 -0.2 635,589 - EX28DRAFT_0641 0.77 -0.3
Or see this region's nucleotide sequence