Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0597

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0596 and EX28DRAFT_0597 are separated by 78 nucleotidesEX28DRAFT_0597 and EX28DRAFT_0598 overlap by 47 nucleotides EX28DRAFT_0596: EX28DRAFT_0596 - Uncharacterized protein conserved in bacteria, at 599,218 to 600,129 _0596 EX28DRAFT_0597: EX28DRAFT_0597 - Uncharacterized small protein, at 600,208 to 600,390 _0597 EX28DRAFT_0598: EX28DRAFT_0598 - diguanylate cyclase (GGDEF) domain, at 600,344 to 602,152 _0598 Position (kb) 600 601Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 599.229 kb on + strandat 599.229 kb on + strandat 599.230 kb on - strandat 599.234 kb on + strandat 599.234 kb on + strandat 599.234 kb on + strandat 599.234 kb on + strandat 599.235 kb on - strandat 599.333 kb on + strand, within EX28DRAFT_0596at 599.334 kb on - strand, within EX28DRAFT_0596at 599.421 kb on + strand, within EX28DRAFT_0596at 599.422 kb on - strand, within EX28DRAFT_0596at 599.525 kb on + strand, within EX28DRAFT_0596at 599.526 kb on - strand, within EX28DRAFT_0596at 599.568 kb on + strand, within EX28DRAFT_0596at 599.568 kb on + strand, within EX28DRAFT_0596at 599.569 kb on - strand, within EX28DRAFT_0596at 599.780 kb on - strand, within EX28DRAFT_0596at 600.111 kb on - strandat 600.127 kb on + strandat 600.127 kb on + strandat 600.127 kb on + strandat 600.195 kb on - strandat 600.207 kb on + strandat 600.208 kb on - strandat 600.235 kb on - strand, within EX28DRAFT_0597at 600.241 kb on - strand, within EX28DRAFT_0597at 600.258 kb on + strand, within EX28DRAFT_0597at 600.258 kb on + strand, within EX28DRAFT_0597at 600.258 kb on + strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.388 kb on + strandat 600.389 kb on - strandat 600.396 kb on + strandat 600.431 kb on + strandat 600.486 kb on + strandat 600.487 kb on - strandat 600.567 kb on + strand, within EX28DRAFT_0598at 600.617 kb on + strand, within EX28DRAFT_0598at 600.618 kb on - strand, within EX28DRAFT_0598at 600.618 kb on - strand, within EX28DRAFT_0598at 600.618 kb on - strand, within EX28DRAFT_0598at 600.634 kb on + strand, within EX28DRAFT_0598at 600.816 kb on + strand, within EX28DRAFT_0598at 600.989 kb on + strand, within EX28DRAFT_0598at 600.990 kb on - strand, within EX28DRAFT_0598at 600.990 kb on - strand, within EX28DRAFT_0598at 601.049 kb on - strand, within EX28DRAFT_0598at 601.061 kb on + strand, within EX28DRAFT_0598at 601.171 kb on + strand, within EX28DRAFT_0598at 601.172 kb on - strand, within EX28DRAFT_0598at 601.196 kb on + strand, within EX28DRAFT_0598at 601.197 kb on - strand, within EX28DRAFT_0598at 601.238 kb on - strand, within EX28DRAFT_0598at 601.323 kb on + strand, within EX28DRAFT_0598at 601.324 kb on + strand, within EX28DRAFT_0598at 601.325 kb on - strand, within EX28DRAFT_0598

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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599,229 + +0.1
599,229 + -4.2
599,230 - -0.1
599,234 + -0.2
599,234 + +0.7
599,234 + +1.9
599,234 + +0.1
599,235 - +1.3
599,333 + EX28DRAFT_0596 0.13 -0.8
599,334 - EX28DRAFT_0596 0.13 -0.9
599,421 + EX28DRAFT_0596 0.22 +0.3
599,422 - EX28DRAFT_0596 0.22 -1.4
599,525 + EX28DRAFT_0596 0.34 +1.0
599,526 - EX28DRAFT_0596 0.34 +1.1
599,568 + EX28DRAFT_0596 0.38 +1.1
599,568 + EX28DRAFT_0596 0.38 -1.2
599,569 - EX28DRAFT_0596 0.38 +0.2
599,780 - EX28DRAFT_0596 0.62 +0.4
600,111 - -3.0
600,127 + -2.6
600,127 + +1.0
600,127 + +0.5
600,195 - +0.2
600,207 + +1.1
600,208 - -0.8
600,235 - EX28DRAFT_0597 0.15 -0.0
600,241 - EX28DRAFT_0597 0.18 -1.7
600,258 + EX28DRAFT_0597 0.27 +0.8
600,258 + EX28DRAFT_0597 0.27 -0.1
600,258 + EX28DRAFT_0597 0.27 -0.3
600,259 - EX28DRAFT_0597 0.28 +0.7
600,259 - EX28DRAFT_0597 0.28 +0.1
600,259 - EX28DRAFT_0597 0.28 -1.8
600,259 - EX28DRAFT_0597 0.28 +0.6
600,388 + -0.3
600,389 - -1.5
600,396 + -0.0
600,431 + +1.3
600,486 + -0.6
600,487 - +0.5
600,567 + EX28DRAFT_0598 0.12 -1.0
600,617 + EX28DRAFT_0598 0.15 -0.0
600,618 - EX28DRAFT_0598 0.15 +0.1
600,618 - EX28DRAFT_0598 0.15 +0.4
600,618 - EX28DRAFT_0598 0.15 -1.9
600,634 + EX28DRAFT_0598 0.16 +0.2
600,816 + EX28DRAFT_0598 0.26 -2.9
600,989 + EX28DRAFT_0598 0.36 +0.8
600,990 - EX28DRAFT_0598 0.36 -1.4
600,990 - EX28DRAFT_0598 0.36 -0.2
601,049 - EX28DRAFT_0598 0.39 +0.3
601,061 + EX28DRAFT_0598 0.40 -2.7
601,171 + EX28DRAFT_0598 0.46 +1.3
601,172 - EX28DRAFT_0598 0.46 +0.4
601,196 + EX28DRAFT_0598 0.47 -3.3
601,197 - EX28DRAFT_0598 0.47 -2.5
601,238 - EX28DRAFT_0598 0.49 -0.4
601,323 + EX28DRAFT_0598 0.54 -0.1
601,324 + EX28DRAFT_0598 0.54 -0.0
601,325 - EX28DRAFT_0598 0.54 -0.4

Or see this region's nucleotide sequence