Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0591 and EX28DRAFT_0592 are separated by 284 nucleotides EX28DRAFT_0592 and EX28DRAFT_0593 are separated by 61 nucleotides
EX28DRAFT_0591: EX28DRAFT_0591 - Outer membrane protein (porin), at 594,076 to 595,218
_0591
EX28DRAFT_0592: EX28DRAFT_0592 - Predicted HD superfamily hydrolase, at 595,503 to 596,204
_0592
EX28DRAFT_0593: EX28DRAFT_0593 - DNA-methyltransferase (dcm), at 596,266 to 597,681
_0593
Position (kb) 595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 594.594 kb on - strand, within EX28DRAFT_0591 at 594.607 kb on - strand, within EX28DRAFT_0591 at 594.607 kb on - strand, within EX28DRAFT_0591 at 594.758 kb on + strand, within EX28DRAFT_0591 at 594.810 kb on - strand, within EX28DRAFT_0591 at 594.837 kb on + strand, within EX28DRAFT_0591 at 594.923 kb on + strand, within EX28DRAFT_0591 at 594.924 kb on - strand, within EX28DRAFT_0591 at 595.115 kb on + strand at 595.146 kb on - strand at 595.289 kb on - strand at 595.580 kb on + strand, within EX28DRAFT_0592 at 595.668 kb on + strand, within EX28DRAFT_0592 at 595.668 kb on + strand, within EX28DRAFT_0592 at 595.791 kb on - strand, within EX28DRAFT_0592 at 595.791 kb on - strand, within EX28DRAFT_0592 at 595.854 kb on - strand, within EX28DRAFT_0592 at 596.052 kb on - strand, within EX28DRAFT_0592 at 596.052 kb on - strand, within EX28DRAFT_0592 at 596.262 kb on - strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.344 kb on + strand at 596.345 kb on - strand at 596.345 kb on - strand at 596.345 kb on - strand at 596.352 kb on + strand at 596.353 kb on - strand at 596.515 kb on + strand, within EX28DRAFT_0593 at 596.515 kb on + strand, within EX28DRAFT_0593 at 596.633 kb on - strand, within EX28DRAFT_0593 at 596.633 kb on - strand, within EX28DRAFT_0593 at 596.633 kb on - strand, within EX28DRAFT_0593 at 596.648 kb on - strand, within EX28DRAFT_0593 at 597.096 kb on + strand, within EX28DRAFT_0593
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 594,594 - EX28DRAFT_0591 0.45 +0.6 594,607 - EX28DRAFT_0591 0.46 +0.0 594,607 - EX28DRAFT_0591 0.46 +0.4 594,758 + EX28DRAFT_0591 0.60 +0.4 594,810 - EX28DRAFT_0591 0.64 -1.0 594,837 + EX28DRAFT_0591 0.67 +0.2 594,923 + EX28DRAFT_0591 0.74 -0.8 594,924 - EX28DRAFT_0591 0.74 +0.1 595,115 + -1.1 595,146 - -0.6 595,289 - -1.5 595,580 + EX28DRAFT_0592 0.11 +0.4 595,668 + EX28DRAFT_0592 0.24 -0.8 595,668 + EX28DRAFT_0592 0.24 -0.8 595,791 - EX28DRAFT_0592 0.41 -0.9 595,791 - EX28DRAFT_0592 0.41 +0.9 595,854 - EX28DRAFT_0592 0.50 -0.3 596,052 - EX28DRAFT_0592 0.78 -0.8 596,052 - EX28DRAFT_0592 0.78 -0.4 596,262 - -3.1 596,344 + -1.5 596,344 + -2.5 596,344 + +1.5 596,344 + -1.7 596,344 + -1.2 596,344 + -0.5 596,345 - -2.7 596,345 - -0.5 596,345 - -0.7 596,352 + -1.4 596,353 - -1.0 596,515 + EX28DRAFT_0593 0.18 -0.5 596,515 + EX28DRAFT_0593 0.18 -0.3 596,633 - EX28DRAFT_0593 0.26 -1.1 596,633 - EX28DRAFT_0593 0.26 -0.5 596,633 - EX28DRAFT_0593 0.26 +1.5 596,648 - EX28DRAFT_0593 0.27 -0.9 597,096 + EX28DRAFT_0593 0.59 -1.8
Or see this region's nucleotide sequence