Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0586 and EX28DRAFT_0587 are separated by 94 nucleotides EX28DRAFT_0587 and EX28DRAFT_0588 overlap by 20 nucleotides EX28DRAFT_0588 and EX28DRAFT_0589 overlap by 4 nucleotides
EX28DRAFT_0586: EX28DRAFT_0586 - flavocytochrome c, at 586,840 to 589,620
_0586
EX28DRAFT_0587: EX28DRAFT_0587 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 589,715 to 590,677
_0587
EX28DRAFT_0588: EX28DRAFT_0588 - Response regulator of citrate/malate metabolism, at 590,658 to 591,377
_0588
EX28DRAFT_0589: EX28DRAFT_0589 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 591,374 to 592,990
_0589
Position (kb) 589
590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 588.878 kb on - strand, within EX28DRAFT_0586 at 589.021 kb on + strand, within EX28DRAFT_0586 at 589.088 kb on - strand, within EX28DRAFT_0586 at 589.148 kb on - strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.175 kb on + strand, within EX28DRAFT_0586 at 589.176 kb on - strand, within EX28DRAFT_0586 at 589.176 kb on - strand, within EX28DRAFT_0586 at 589.176 kb on - strand, within EX28DRAFT_0586 at 589.205 kb on - strand, within EX28DRAFT_0586 at 589.561 kb on - strand at 589.696 kb on - strand at 589.736 kb on + strand at 589.995 kb on + strand, within EX28DRAFT_0587 at 590.177 kb on + strand, within EX28DRAFT_0587 at 590.178 kb on - strand, within EX28DRAFT_0587 at 590.201 kb on + strand, within EX28DRAFT_0587 at 590.202 kb on - strand, within EX28DRAFT_0587 at 590.413 kb on + strand, within EX28DRAFT_0587 at 590.413 kb on + strand, within EX28DRAFT_0587 at 590.413 kb on + strand, within EX28DRAFT_0587 at 590.516 kb on + strand, within EX28DRAFT_0587 at 590.516 kb on + strand, within EX28DRAFT_0587 at 590.516 kb on + strand, within EX28DRAFT_0587 at 590.981 kb on - strand, within EX28DRAFT_0588 at 590.983 kb on + strand, within EX28DRAFT_0588 at 590.984 kb on - strand, within EX28DRAFT_0588 at 590.984 kb on - strand, within EX28DRAFT_0588 at 590.984 kb on - strand, within EX28DRAFT_0588 at 590.984 kb on - strand, within EX28DRAFT_0588 at 591.071 kb on - strand, within EX28DRAFT_0588 at 591.203 kb on + strand, within EX28DRAFT_0588 at 591.203 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.206 kb on - strand, within EX28DRAFT_0588 at 591.246 kb on - strand, within EX28DRAFT_0588 at 591.249 kb on - strand, within EX28DRAFT_0588 at 591.249 kb on - strand, within EX28DRAFT_0588 at 591.249 kb on - strand, within EX28DRAFT_0588 at 591.296 kb on + strand, within EX28DRAFT_0588 at 591.319 kb on + strand at 591.319 kb on + strand at 591.320 kb on - strand at 591.363 kb on + strand at 591.363 kb on + strand at 591.364 kb on - strand at 591.367 kb on - strand at 591.373 kb on - strand at 591.373 kb on - strand at 591.373 kb on - strand at 591.382 kb on + strand at 591.425 kb on - strand at 591.539 kb on - strand, within EX28DRAFT_0589 at 591.545 kb on - strand, within EX28DRAFT_0589 at 591.616 kb on - strand, within EX28DRAFT_0589
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 588,878 - EX28DRAFT_0586 0.73 +0.6 589,021 + EX28DRAFT_0586 0.78 +0.7 589,088 - EX28DRAFT_0586 0.81 -0.3 589,148 - EX28DRAFT_0586 0.83 -0.7 589,153 + EX28DRAFT_0586 0.83 +0.0 589,153 + EX28DRAFT_0586 0.83 -1.0 589,153 + EX28DRAFT_0586 0.83 -1.1 589,153 + EX28DRAFT_0586 0.83 -0.8 589,153 + EX28DRAFT_0586 0.83 +0.1 589,153 + EX28DRAFT_0586 0.83 -1.4 589,154 - EX28DRAFT_0586 0.83 +1.9 589,154 - EX28DRAFT_0586 0.83 +0.9 589,154 - EX28DRAFT_0586 0.83 -2.2 589,154 - EX28DRAFT_0586 0.83 +1.1 589,175 + EX28DRAFT_0586 0.84 -0.0 589,176 - EX28DRAFT_0586 0.84 +0.6 589,176 - EX28DRAFT_0586 0.84 -0.8 589,176 - EX28DRAFT_0586 0.84 -1.3 589,205 - EX28DRAFT_0586 0.85 -3.2 589,561 - +0.8 589,696 - -3.5 589,736 + +0.2 589,995 + EX28DRAFT_0587 0.29 -0.3 590,177 + EX28DRAFT_0587 0.48 +1.1 590,178 - EX28DRAFT_0587 0.48 +2.1 590,201 + EX28DRAFT_0587 0.50 +1.2 590,202 - EX28DRAFT_0587 0.51 +0.1 590,413 + EX28DRAFT_0587 0.72 -2.9 590,413 + EX28DRAFT_0587 0.72 -3.8 590,413 + EX28DRAFT_0587 0.72 +1.8 590,516 + EX28DRAFT_0587 0.83 -1.0 590,516 + EX28DRAFT_0587 0.83 -1.7 590,516 + EX28DRAFT_0587 0.83 +1.8 590,981 - EX28DRAFT_0588 0.45 +0.3 590,983 + EX28DRAFT_0588 0.45 +1.2 590,984 - EX28DRAFT_0588 0.45 -0.0 590,984 - EX28DRAFT_0588 0.45 +0.6 590,984 - EX28DRAFT_0588 0.45 +0.3 590,984 - EX28DRAFT_0588 0.45 -0.8 591,071 - EX28DRAFT_0588 0.57 +0.6 591,203 + EX28DRAFT_0588 0.76 +0.3 591,203 + EX28DRAFT_0588 0.76 +1.4 591,205 + EX28DRAFT_0588 0.76 -1.6 591,205 + EX28DRAFT_0588 0.76 +0.2 591,205 + EX28DRAFT_0588 0.76 +0.7 591,205 + EX28DRAFT_0588 0.76 +1.8 591,205 + EX28DRAFT_0588 0.76 +1.1 591,206 - EX28DRAFT_0588 0.76 -0.0 591,246 - EX28DRAFT_0588 0.82 +1.3 591,249 - EX28DRAFT_0588 0.82 -0.1 591,249 - EX28DRAFT_0588 0.82 -1.1 591,249 - EX28DRAFT_0588 0.82 +1.2 591,296 + EX28DRAFT_0588 0.89 -3.3 591,319 + +0.6 591,319 + -0.3 591,320 - +0.2 591,363 + +1.8 591,363 + +0.6 591,364 - +1.9 591,367 - -0.2 591,373 - +0.3 591,373 - -0.1 591,373 - +0.9 591,382 + +1.4 591,425 - +0.5 591,539 - EX28DRAFT_0589 0.10 -0.0 591,545 - EX28DRAFT_0589 0.11 +1.9 591,616 - EX28DRAFT_0589 0.15 +0.6
Or see this region's nucleotide sequence