Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0562 and EX28DRAFT_0563 are separated by 61 nucleotides EX28DRAFT_0563 and EX28DRAFT_0564 are separated by 59 nucleotides EX28DRAFT_0564 and EX28DRAFT_0565 are separated by 320 nucleotides
EX28DRAFT_0562: EX28DRAFT_0562 - ATPase, P-type (transporting), HAD superfamily, subfamily IC, at 557,962 to 560,655
_0562
EX28DRAFT_0563: EX28DRAFT_0563 - Uncharacterized protein conserved in bacteria, at 560,717 to 561,613
_0563
EX28DRAFT_0564: EX28DRAFT_0564 - tRNA, at 561,673 to 561,748
_0564
EX28DRAFT_0565: EX28DRAFT_0565 - Transcriptional regulator, at 562,069 to 562,986
_0565
Position (kb) 560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 559.771 kb on + strand, within EX28DRAFT_0562 at 559.776 kb on + strand, within EX28DRAFT_0562 at 559.833 kb on + strand, within EX28DRAFT_0562 at 560.240 kb on + strand, within EX28DRAFT_0562 at 560.240 kb on + strand, within EX28DRAFT_0562 at 560.240 kb on + strand, within EX28DRAFT_0562 at 560.395 kb on + strand at 560.396 kb on - strand at 560.396 kb on - strand at 560.480 kb on + strand at 560.481 kb on - strand at 560.510 kb on - strand at 560.602 kb on - strand at 560.653 kb on + strand at 560.654 kb on - strand at 560.657 kb on - strand at 560.662 kb on - strand at 560.716 kb on + strand at 560.717 kb on - strand at 560.729 kb on - strand at 560.783 kb on + strand at 560.785 kb on + strand at 560.786 kb on - strand at 560.903 kb on - strand, within EX28DRAFT_0563 at 560.964 kb on + strand, within EX28DRAFT_0563 at 561.035 kb on + strand, within EX28DRAFT_0563 at 561.038 kb on + strand, within EX28DRAFT_0563 at 561.038 kb on + strand, within EX28DRAFT_0563 at 561.039 kb on - strand, within EX28DRAFT_0563 at 561.137 kb on - strand, within EX28DRAFT_0563 at 561.251 kb on + strand, within EX28DRAFT_0563 at 561.261 kb on - strand, within EX28DRAFT_0563 at 561.261 kb on - strand, within EX28DRAFT_0563 at 561.275 kb on + strand, within EX28DRAFT_0563 at 561.275 kb on + strand, within EX28DRAFT_0563 at 561.275 kb on + strand, within EX28DRAFT_0563 at 561.276 kb on - strand, within EX28DRAFT_0563 at 561.292 kb on + strand, within EX28DRAFT_0563 at 561.362 kb on + strand, within EX28DRAFT_0563 at 561.506 kb on - strand, within EX28DRAFT_0563 at 561.506 kb on - strand, within EX28DRAFT_0563 at 561.629 kb on - strand at 561.768 kb on + strand at 561.924 kb on + strand at 561.925 kb on - strand at 561.925 kb on - strand at 561.939 kb on + strand at 561.940 kb on - strand at 561.943 kb on + strand at 561.943 kb on + strand at 561.944 kb on - strand at 562.076 kb on + strand at 562.090 kb on + strand at 562.091 kb on - strand at 562.261 kb on + strand, within EX28DRAFT_0565 at 562.261 kb on + strand, within EX28DRAFT_0565 at 562.262 kb on - strand, within EX28DRAFT_0565 at 562.264 kb on - strand, within EX28DRAFT_0565 at 562.383 kb on + strand, within EX28DRAFT_0565 at 562.438 kb on + strand, within EX28DRAFT_0565 at 562.439 kb on - strand, within EX28DRAFT_0565 at 562.604 kb on + strand, within EX28DRAFT_0565
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 559,771 + EX28DRAFT_0562 0.67 +1.6 559,776 + EX28DRAFT_0562 0.67 +1.2 559,833 + EX28DRAFT_0562 0.69 +0.8 560,240 + EX28DRAFT_0562 0.85 -0.0 560,240 + EX28DRAFT_0562 0.85 +1.0 560,240 + EX28DRAFT_0562 0.85 -2.3 560,395 + -1.4 560,396 - +0.0 560,396 - -0.6 560,480 + -1.1 560,481 - +1.8 560,510 - +0.5 560,602 - +0.2 560,653 + +1.4 560,654 - +0.3 560,657 - -1.4 560,662 - -0.6 560,716 + +0.8 560,717 - +0.6 560,729 - -0.6 560,783 + -1.4 560,785 + -2.8 560,786 - -0.1 560,903 - EX28DRAFT_0563 0.21 +0.3 560,964 + EX28DRAFT_0563 0.28 -1.3 561,035 + EX28DRAFT_0563 0.35 -0.6 561,038 + EX28DRAFT_0563 0.36 -0.7 561,038 + EX28DRAFT_0563 0.36 +0.7 561,039 - EX28DRAFT_0563 0.36 -0.3 561,137 - EX28DRAFT_0563 0.47 -0.3 561,251 + EX28DRAFT_0563 0.60 +1.4 561,261 - EX28DRAFT_0563 0.61 -0.6 561,261 - EX28DRAFT_0563 0.61 -0.3 561,275 + EX28DRAFT_0563 0.62 +1.9 561,275 + EX28DRAFT_0563 0.62 +0.4 561,275 + EX28DRAFT_0563 0.62 -0.3 561,276 - EX28DRAFT_0563 0.62 -0.1 561,292 + EX28DRAFT_0563 0.64 +2.5 561,362 + EX28DRAFT_0563 0.72 +1.3 561,506 - EX28DRAFT_0563 0.88 +1.3 561,506 - EX28DRAFT_0563 0.88 +0.3 561,629 - -1.2 561,768 + +0.7 561,924 + -2.7 561,925 - +1.5 561,925 - -1.7 561,939 + +1.0 561,940 - -1.7 561,943 + +0.5 561,943 + -0.1 561,944 - +0.5 562,076 + +1.1 562,090 + -1.5 562,091 - -0.1 562,261 + EX28DRAFT_0565 0.21 +0.3 562,261 + EX28DRAFT_0565 0.21 -0.7 562,262 - EX28DRAFT_0565 0.21 +1.1 562,264 - EX28DRAFT_0565 0.21 +1.8 562,383 + EX28DRAFT_0565 0.34 -0.7 562,438 + EX28DRAFT_0565 0.40 +1.4 562,439 - EX28DRAFT_0565 0.40 -1.8 562,604 + EX28DRAFT_0565 0.58 -0.8
Or see this region's nucleotide sequence