Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0521

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0519 and EX28DRAFT_0520 are separated by 80 nucleotidesEX28DRAFT_0520 and EX28DRAFT_0521 overlap by 4 nucleotidesEX28DRAFT_0521 and EX28DRAFT_0522 overlap by 8 nucleotides EX28DRAFT_0519: EX28DRAFT_0519 - Predicted nucleoside-diphosphate sugar epimerases, at 512,203 to 514,089 _0519 EX28DRAFT_0520: EX28DRAFT_0520 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 514,170 to 514,709 _0520 EX28DRAFT_0521: EX28DRAFT_0521 - Nucleoside-diphosphate-sugar epimerases, at 514,706 to 515,524 _0521 EX28DRAFT_0522: EX28DRAFT_0522 - hypothetical protein, at 515,517 to 516,776 _0522 Position (kb) 514 515 516Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 514.020 kb on - strandat 514.020 kb on - strandat 514.039 kb on - strandat 514.381 kb on + strand, within EX28DRAFT_0520at 514.721 kb on - strandat 514.850 kb on + strand, within EX28DRAFT_0521at 514.893 kb on + strand, within EX28DRAFT_0521at 515.300 kb on + strand, within EX28DRAFT_0521

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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514,020 - +0.6
514,020 - +0.7
514,039 - +0.9
514,381 + EX28DRAFT_0520 0.39 -1.2
514,721 - -0.6
514,850 + EX28DRAFT_0521 0.18 -1.7
514,893 + EX28DRAFT_0521 0.23 -4.6
515,300 + EX28DRAFT_0521 0.73 -1.5

Or see this region's nucleotide sequence