Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0509 and EX28DRAFT_0510 are separated by 17 nucleotides EX28DRAFT_0510 and EX28DRAFT_0511 overlap by 4 nucleotides
EX28DRAFT_0509: EX28DRAFT_0509 - Membrane protein involved in the export of O-antigen and teichoic acid, at 501,660 to 503,138
_0509
EX28DRAFT_0510: EX28DRAFT_0510 - colanic acid biosynthesis pyruvyl transferase WcaK, at 503,156 to 504,436
_0510
EX28DRAFT_0511: EX28DRAFT_0511 - colanic acid biosynthesis glycosyltransferase WcaL, at 504,433 to 505,653
_0511
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 502.329 kb on + strand, within EX28DRAFT_0509 at 502.329 kb on + strand, within EX28DRAFT_0509 at 502.329 kb on + strand, within EX28DRAFT_0509 at 502.330 kb on - strand, within EX28DRAFT_0509 at 502.330 kb on - strand, within EX28DRAFT_0509 at 502.408 kb on - strand, within EX28DRAFT_0509 at 502.408 kb on - strand, within EX28DRAFT_0509 at 502.855 kb on - strand, within EX28DRAFT_0509 at 502.899 kb on + strand, within EX28DRAFT_0509 at 502.900 kb on - strand, within EX28DRAFT_0509 at 503.137 kb on - strand at 503.140 kb on + strand at 503.167 kb on - strand at 503.182 kb on + strand at 503.182 kb on + strand at 503.183 kb on - strand at 503.183 kb on - strand at 503.224 kb on - strand at 503.224 kb on - strand at 503.237 kb on - strand at 503.507 kb on + strand, within EX28DRAFT_0510 at 503.585 kb on - strand, within EX28DRAFT_0510 at 503.669 kb on + strand, within EX28DRAFT_0510 at 503.819 kb on + strand, within EX28DRAFT_0510 at 503.928 kb on - strand, within EX28DRAFT_0510 at 504.018 kb on - strand, within EX28DRAFT_0510 at 504.018 kb on - strand, within EX28DRAFT_0510 at 504.018 kb on - strand, within EX28DRAFT_0510 at 504.080 kb on + strand, within EX28DRAFT_0510 at 504.274 kb on + strand, within EX28DRAFT_0510 at 504.274 kb on + strand, within EX28DRAFT_0510 at 504.276 kb on + strand, within EX28DRAFT_0510 at 504.276 kb on + strand, within EX28DRAFT_0510 at 504.276 kb on + strand, within EX28DRAFT_0510 at 504.276 kb on + strand, within EX28DRAFT_0510 at 504.276 kb on + strand, within EX28DRAFT_0510 at 504.276 kb on + strand, within EX28DRAFT_0510 at 504.276 kb on + strand, within EX28DRAFT_0510 at 504.277 kb on - strand, within EX28DRAFT_0510 at 504.277 kb on - strand, within EX28DRAFT_0510 at 504.277 kb on - strand, within EX28DRAFT_0510 at 504.277 kb on - strand, within EX28DRAFT_0510 at 504.277 kb on - strand, within EX28DRAFT_0510 at 504.277 kb on - strand, within EX28DRAFT_0510 at 504.408 kb on + strand at 504.577 kb on + strand, within EX28DRAFT_0511 at 504.578 kb on - strand, within EX28DRAFT_0511 at 504.935 kb on - strand, within EX28DRAFT_0511 at 505.428 kb on - strand, within EX28DRAFT_0511
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 502,329 + EX28DRAFT_0509 0.45 -0.9 502,329 + EX28DRAFT_0509 0.45 -3.6 502,329 + EX28DRAFT_0509 0.45 +1.8 502,330 - EX28DRAFT_0509 0.45 +0.0 502,330 - EX28DRAFT_0509 0.45 +0.3 502,408 - EX28DRAFT_0509 0.51 +0.3 502,408 - EX28DRAFT_0509 0.51 +0.3 502,855 - EX28DRAFT_0509 0.81 -0.5 502,899 + EX28DRAFT_0509 0.84 +0.8 502,900 - EX28DRAFT_0509 0.84 -0.1 503,137 - +2.6 503,140 + +0.3 503,167 - +0.3 503,182 + -0.5 503,182 + -0.3 503,183 - -1.3 503,183 - -1.2 503,224 - -0.4 503,224 - +3.4 503,237 - +0.0 503,507 + EX28DRAFT_0510 0.27 +0.4 503,585 - EX28DRAFT_0510 0.33 +3.9 503,669 + EX28DRAFT_0510 0.40 -1.3 503,819 + EX28DRAFT_0510 0.52 +0.3 503,928 - EX28DRAFT_0510 0.60 +0.3 504,018 - EX28DRAFT_0510 0.67 -0.8 504,018 - EX28DRAFT_0510 0.67 +0.4 504,018 - EX28DRAFT_0510 0.67 +0.1 504,080 + EX28DRAFT_0510 0.72 +0.6 504,274 + EX28DRAFT_0510 0.87 +0.5 504,274 + EX28DRAFT_0510 0.87 -0.6 504,276 + EX28DRAFT_0510 0.87 -1.8 504,276 + EX28DRAFT_0510 0.87 +0.3 504,276 + EX28DRAFT_0510 0.87 +1.3 504,276 + EX28DRAFT_0510 0.87 +0.8 504,276 + EX28DRAFT_0510 0.87 +0.9 504,276 + EX28DRAFT_0510 0.87 +0.3 504,276 + EX28DRAFT_0510 0.87 +0.4 504,277 - EX28DRAFT_0510 0.88 -1.0 504,277 - EX28DRAFT_0510 0.88 -0.0 504,277 - EX28DRAFT_0510 0.88 -0.3 504,277 - EX28DRAFT_0510 0.88 -1.0 504,277 - EX28DRAFT_0510 0.88 +1.6 504,277 - EX28DRAFT_0510 0.88 -0.0 504,408 + -0.2 504,577 + EX28DRAFT_0511 0.12 +0.5 504,578 - EX28DRAFT_0511 0.12 +1.8 504,935 - EX28DRAFT_0511 0.41 -0.4 505,428 - EX28DRAFT_0511 0.81 +0.9
Or see this region's nucleotide sequence