Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0463

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0461 and EX28DRAFT_0462 are separated by 161 nucleotidesEX28DRAFT_0462 and EX28DRAFT_0463 are separated by 298 nucleotidesEX28DRAFT_0463 and EX28DRAFT_0464 are separated by 170 nucleotidesEX28DRAFT_0464 and EX28DRAFT_0465 are separated by 438 nucleotidesEX28DRAFT_0465 and EX28DRAFT_0466 overlap by 4 nucleotides EX28DRAFT_0461: EX28DRAFT_0461 - tRNA_anti-like, at 445,730 to 446,512 _0461 EX28DRAFT_0462: EX28DRAFT_0462 - hypothetical protein, at 446,674 to 446,871 _0462 EX28DRAFT_0463: EX28DRAFT_0463 - Site-specific recombinases, DNA invertase Pin homologs, at 447,170 to 447,796 _0463 EX28DRAFT_0464: EX28DRAFT_0464 - hypothetical protein, at 447,967 to 448,158 _0464 EX28DRAFT_0465: EX28DRAFT_0465 - hypothetical protein, at 448,597 to 448,746 _0465 EX28DRAFT_0466: EX28DRAFT_0466 - hypothetical protein, at 448,743 to 449,234 _0466 Position (kb) 447 448Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 446.207 kb on + strand, within EX28DRAFT_0461at 446.240 kb on + strand, within EX28DRAFT_0461at 446.284 kb on + strand, within EX28DRAFT_0461at 446.285 kb on - strand, within EX28DRAFT_0461at 446.316 kb on + strand, within EX28DRAFT_0461at 446.316 kb on + strand, within EX28DRAFT_0461at 446.317 kb on - strand, within EX28DRAFT_0461at 446.317 kb on - strand, within EX28DRAFT_0461at 446.347 kb on + strand, within EX28DRAFT_0461at 446.500 kb on + strandat 446.500 kb on + strandat 446.506 kb on + strandat 446.552 kb on + strandat 446.597 kb on - strandat 446.604 kb on - strandat 446.647 kb on - strandat 446.695 kb on - strand, within EX28DRAFT_0462at 446.699 kb on + strand, within EX28DRAFT_0462at 446.699 kb on + strand, within EX28DRAFT_0462at 446.700 kb on - strand, within EX28DRAFT_0462at 446.799 kb on - strand, within EX28DRAFT_0462at 446.822 kb on - strand, within EX28DRAFT_0462at 446.837 kb on + strand, within EX28DRAFT_0462at 446.837 kb on + strand, within EX28DRAFT_0462at 446.868 kb on - strandat 446.869 kb on + strandat 446.948 kb on + strandat 446.951 kb on + strandat 446.951 kb on + strandat 446.968 kb on - strandat 446.968 kb on - strandat 446.998 kb on + strandat 446.999 kb on - strandat 447.075 kb on + strandat 447.075 kb on + strandat 447.076 kb on - strandat 447.076 kb on - strandat 447.076 kb on - strandat 447.099 kb on + strandat 447.099 kb on + strandat 447.099 kb on + strandat 447.108 kb on + strandat 447.108 kb on + strandat 447.108 kb on + strandat 447.108 kb on + strandat 447.108 kb on + strandat 447.109 kb on - strandat 447.109 kb on - strandat 447.109 kb on - strandat 447.109 kb on - strandat 447.137 kb on + strandat 447.138 kb on - strandat 447.144 kb on - strandat 447.251 kb on - strand, within EX28DRAFT_0463at 447.270 kb on + strand, within EX28DRAFT_0463at 447.278 kb on - strand, within EX28DRAFT_0463at 447.318 kb on + strand, within EX28DRAFT_0463at 447.323 kb on - strand, within EX28DRAFT_0463at 447.379 kb on - strand, within EX28DRAFT_0463at 447.478 kb on + strand, within EX28DRAFT_0463at 447.479 kb on - strand, within EX28DRAFT_0463at 447.546 kb on - strand, within EX28DRAFT_0463at 447.546 kb on - strand, within EX28DRAFT_0463at 447.673 kb on - strand, within EX28DRAFT_0463at 447.766 kb on - strandat 447.786 kb on + strandat 447.786 kb on + strandat 447.787 kb on - strandat 447.787 kb on - strandat 447.791 kb on - strandat 447.791 kb on - strandat 447.791 kb on - strandat 447.791 kb on - strandat 447.851 kb on - strandat 447.851 kb on - strandat 447.851 kb on - strandat 447.914 kb on - strandat 447.914 kb on - strandat 447.915 kb on + strandat 447.916 kb on - strandat 447.939 kb on + strandat 447.939 kb on + strandat 447.939 kb on + strandat 447.995 kb on + strand, within EX28DRAFT_0464at 447.996 kb on - strand, within EX28DRAFT_0464at 448.033 kb on - strand, within EX28DRAFT_0464at 448.093 kb on + strand, within EX28DRAFT_0464at 448.093 kb on + strand, within EX28DRAFT_0464at 448.125 kb on - strand, within EX28DRAFT_0464at 448.159 kb on - strandat 448.159 kb on - strandat 448.159 kb on - strandat 448.164 kb on + strandat 448.237 kb on + strandat 448.237 kb on + strandat 448.237 kb on + strandat 448.238 kb on - strandat 448.251 kb on - strandat 448.251 kb on - strandat 448.264 kb on + strandat 448.286 kb on - strandat 448.424 kb on - strandat 448.513 kb on + strandat 448.514 kb on - strandat 448.523 kb on + strandat 448.785 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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446,207 + EX28DRAFT_0461 0.61 -1.1
446,240 + EX28DRAFT_0461 0.65 -0.2
446,284 + EX28DRAFT_0461 0.71 +0.6
446,285 - EX28DRAFT_0461 0.71 -1.5
446,316 + EX28DRAFT_0461 0.75 -0.7
446,316 + EX28DRAFT_0461 0.75 +1.1
446,317 - EX28DRAFT_0461 0.75 -0.2
446,317 - EX28DRAFT_0461 0.75 -1.6
446,347 + EX28DRAFT_0461 0.79 +0.4
446,500 + -1.9
446,500 + -0.6
446,506 + +0.3
446,552 + -0.8
446,597 - -0.4
446,604 - +1.8
446,647 - -0.5
446,695 - EX28DRAFT_0462 0.11 +2.3
446,699 + EX28DRAFT_0462 0.13 +0.1
446,699 + EX28DRAFT_0462 0.13 -3.0
446,700 - EX28DRAFT_0462 0.13 -0.3
446,799 - EX28DRAFT_0462 0.63 -0.8
446,822 - EX28DRAFT_0462 0.75 -1.8
446,837 + EX28DRAFT_0462 0.82 -0.8
446,837 + EX28DRAFT_0462 0.82 -1.8
446,868 - +1.5
446,869 + -0.1
446,948 + -0.4
446,951 + -1.3
446,951 + -1.3
446,968 - -0.2
446,968 - +1.6
446,998 + -2.2
446,999 - +0.4
447,075 + +0.5
447,075 + -1.7
447,076 - +2.0
447,076 - -2.7
447,076 - +0.4
447,099 + -0.6
447,099 + -0.5
447,099 + -0.2
447,108 + -0.3
447,108 + +0.3
447,108 + +1.1
447,108 + +4.4
447,108 + -1.4
447,109 - +2.6
447,109 - +0.3
447,109 - -2.5
447,109 - -0.0
447,137 + -1.1
447,138 - -0.1
447,144 - +0.3
447,251 - EX28DRAFT_0463 0.13 -2.8
447,270 + EX28DRAFT_0463 0.16 -1.3
447,278 - EX28DRAFT_0463 0.17 -0.7
447,318 + EX28DRAFT_0463 0.24 -1.6
447,323 - EX28DRAFT_0463 0.24 -0.6
447,379 - EX28DRAFT_0463 0.33 -1.3
447,478 + EX28DRAFT_0463 0.49 +0.8
447,479 - EX28DRAFT_0463 0.49 -0.4
447,546 - EX28DRAFT_0463 0.60 -0.6
447,546 - EX28DRAFT_0463 0.60 -0.4
447,673 - EX28DRAFT_0463 0.80 -0.8
447,766 - +0.6
447,786 + +1.5
447,786 + -0.8
447,787 - -2.3
447,787 - -0.0
447,791 - -0.7
447,791 - +0.0
447,791 - +1.8
447,791 - +1.8
447,851 - +0.6
447,851 - -0.7
447,851 - +0.1
447,914 - +3.2
447,914 - +0.0
447,915 + -2.1
447,916 - -1.5
447,939 + -1.7
447,939 + -0.1
447,939 + +1.1
447,995 + EX28DRAFT_0464 0.15 -0.4
447,996 - EX28DRAFT_0464 0.15 -1.0
448,033 - EX28DRAFT_0464 0.34 -0.0
448,093 + EX28DRAFT_0464 0.66 +0.9
448,093 + EX28DRAFT_0464 0.66 +1.2
448,125 - EX28DRAFT_0464 0.82 +0.1
448,159 - +0.1
448,159 - -1.7
448,159 - -0.2
448,164 + -0.3
448,237 + +0.3
448,237 + +3.4
448,237 + +1.6
448,238 - -0.1
448,251 - -0.6
448,251 - -2.0
448,264 + +0.7
448,286 - +0.3
448,424 - -0.5
448,513 + +0.4
448,514 - +1.1
448,523 + -0.3
448,785 + +0.3

Or see this region's nucleotide sequence