Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0443 and EX28DRAFT_0444 overlap by 1 nucleotides EX28DRAFT_0444 and EX28DRAFT_0445 overlap by 1 nucleotides EX28DRAFT_0445 and EX28DRAFT_0446 are separated by 76 nucleotides EX28DRAFT_0446 and EX28DRAFT_0447 are separated by 35 nucleotides
EX28DRAFT_0443: EX28DRAFT_0443 - Periplasmic protein involved in polysaccharide export, at 424,003 to 425,143
_0443
EX28DRAFT_0444: EX28DRAFT_0444 - Protein-tyrosine-phosphatase, at 425,143 to 425,592
_0444
EX28DRAFT_0445: EX28DRAFT_0445 - capsular exopolysaccharide family, at 425,592 to 427,772
_0445
EX28DRAFT_0446: EX28DRAFT_0446 - Thiol-disulfide isomerase and thioredoxins, at 427,849 to 428,364
_0446
EX28DRAFT_0447: EX28DRAFT_0447 - Glutamate decarboxylase and related PLP-dependent proteins, at 428,400 to 429,866
_0447
Position (kb) 425
426
427
428 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 424.632 kb on + strand, within EX28DRAFT_0443 at 424.680 kb on + strand, within EX28DRAFT_0443 at 424.681 kb on - strand, within EX28DRAFT_0443 at 424.681 kb on - strand, within EX28DRAFT_0443 at 424.801 kb on - strand, within EX28DRAFT_0443 at 424.873 kb on + strand, within EX28DRAFT_0443 at 424.915 kb on + strand, within EX28DRAFT_0443 at 424.915 kb on + strand, within EX28DRAFT_0443 at 424.916 kb on - strand, within EX28DRAFT_0443 at 424.945 kb on + strand, within EX28DRAFT_0443 at 424.949 kb on + strand, within EX28DRAFT_0443 at 424.949 kb on + strand, within EX28DRAFT_0443 at 424.950 kb on - strand, within EX28DRAFT_0443 at 425.012 kb on + strand, within EX28DRAFT_0443 at 425.025 kb on - strand, within EX28DRAFT_0443 at 425.025 kb on - strand, within EX28DRAFT_0443 at 425.120 kb on + strand at 425.141 kb on + strand at 425.142 kb on - strand at 425.178 kb on + strand at 425.238 kb on + strand, within EX28DRAFT_0444 at 425.519 kb on - strand, within EX28DRAFT_0444 at 425.519 kb on - strand, within EX28DRAFT_0444 at 425.519 kb on - strand, within EX28DRAFT_0444 at 425.591 kb on - strand at 425.604 kb on - strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.616 kb on + strand at 425.617 kb on - strand at 425.619 kb on - strand at 425.915 kb on - strand, within EX28DRAFT_0445 at 425.925 kb on + strand, within EX28DRAFT_0445 at 425.925 kb on + strand, within EX28DRAFT_0445 at 425.925 kb on + strand, within EX28DRAFT_0445 at 425.926 kb on - strand, within EX28DRAFT_0445 at 425.926 kb on - strand, within EX28DRAFT_0445 at 425.987 kb on + strand, within EX28DRAFT_0445 at 425.988 kb on - strand, within EX28DRAFT_0445 at 426.001 kb on + strand, within EX28DRAFT_0445 at 426.002 kb on - strand, within EX28DRAFT_0445 at 426.248 kb on + strand, within EX28DRAFT_0445 at 426.278 kb on + strand, within EX28DRAFT_0445 at 426.332 kb on + strand, within EX28DRAFT_0445 at 426.332 kb on + strand, within EX28DRAFT_0445 at 426.333 kb on - strand, within EX28DRAFT_0445 at 426.333 kb on - strand, within EX28DRAFT_0445 at 426.335 kb on + strand, within EX28DRAFT_0445 at 426.365 kb on + strand, within EX28DRAFT_0445 at 426.426 kb on - strand, within EX28DRAFT_0445 at 426.499 kb on + strand, within EX28DRAFT_0445 at 426.499 kb on + strand, within EX28DRAFT_0445 at 426.500 kb on - strand, within EX28DRAFT_0445 at 426.500 kb on - strand, within EX28DRAFT_0445 at 426.500 kb on - strand, within EX28DRAFT_0445 at 426.749 kb on - strand, within EX28DRAFT_0445 at 426.750 kb on + strand, within EX28DRAFT_0445 at 426.750 kb on + strand, within EX28DRAFT_0445 at 426.751 kb on - strand, within EX28DRAFT_0445 at 426.785 kb on + strand, within EX28DRAFT_0445 at 426.822 kb on - strand, within EX28DRAFT_0445 at 426.881 kb on - strand, within EX28DRAFT_0445 at 426.883 kb on + strand, within EX28DRAFT_0445 at 426.884 kb on - strand, within EX28DRAFT_0445 at 426.887 kb on + strand, within EX28DRAFT_0445 at 426.888 kb on - strand, within EX28DRAFT_0445 at 426.888 kb on - strand, within EX28DRAFT_0445 at 426.888 kb on - strand, within EX28DRAFT_0445 at 426.888 kb on - strand, within EX28DRAFT_0445 at 426.888 kb on - strand, within EX28DRAFT_0445 at 426.954 kb on - strand, within EX28DRAFT_0445 at 427.121 kb on + strand, within EX28DRAFT_0445 at 427.122 kb on - strand, within EX28DRAFT_0445 at 427.166 kb on + strand, within EX28DRAFT_0445 at 427.166 kb on + strand, within EX28DRAFT_0445 at 427.290 kb on - strand, within EX28DRAFT_0445 at 427.302 kb on - strand, within EX28DRAFT_0445 at 427.314 kb on + strand, within EX28DRAFT_0445 at 427.314 kb on + strand, within EX28DRAFT_0445 at 427.314 kb on + strand, within EX28DRAFT_0445 at 427.450 kb on + strand, within EX28DRAFT_0445 at 427.450 kb on + strand, within EX28DRAFT_0445 at 427.450 kb on + strand, within EX28DRAFT_0445 at 427.450 kb on + strand, within EX28DRAFT_0445 at 427.451 kb on - strand, within EX28DRAFT_0445 at 427.505 kb on - strand, within EX28DRAFT_0445 at 427.505 kb on - strand, within EX28DRAFT_0445 at 427.722 kb on + strand at 427.722 kb on + strand at 427.723 kb on - strand at 427.725 kb on + strand at 427.726 kb on - strand at 427.739 kb on + strand at 427.760 kb on + strand at 427.760 kb on + strand at 427.771 kb on - strand at 427.792 kb on + strand at 428.016 kb on + strand, within EX28DRAFT_0446 at 428.053 kb on + strand, within EX28DRAFT_0446 at 428.079 kb on - strand, within EX28DRAFT_0446 at 428.139 kb on + strand, within EX28DRAFT_0446 at 428.140 kb on - strand, within EX28DRAFT_0446 at 428.258 kb on + strand, within EX28DRAFT_0446 at 428.302 kb on - strand, within EX28DRAFT_0446 at 428.334 kb on - strand at 428.367 kb on + strand at 428.401 kb on + strand at 428.402 kb on - strand at 428.402 kb on - strand at 428.402 kb on - strand at 428.655 kb on - strand, within EX28DRAFT_0447
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 424,632 + EX28DRAFT_0443 0.55 -0.1 424,680 + EX28DRAFT_0443 0.59 +0.5 424,681 - EX28DRAFT_0443 0.59 +0.3 424,681 - EX28DRAFT_0443 0.59 -0.3 424,801 - EX28DRAFT_0443 0.70 +1.9 424,873 + EX28DRAFT_0443 0.76 +1.5 424,915 + EX28DRAFT_0443 0.80 -0.7 424,915 + EX28DRAFT_0443 0.80 -0.2 424,916 - EX28DRAFT_0443 0.80 +3.5 424,945 + EX28DRAFT_0443 0.83 -1.2 424,949 + EX28DRAFT_0443 0.83 -1.3 424,949 + EX28DRAFT_0443 0.83 -0.1 424,950 - EX28DRAFT_0443 0.83 -0.4 425,012 + EX28DRAFT_0443 0.88 -0.1 425,025 - EX28DRAFT_0443 0.90 +0.3 425,025 - EX28DRAFT_0443 0.90 -0.5 425,120 + +0.5 425,141 + +0.1 425,142 - -0.3 425,178 + +1.4 425,238 + EX28DRAFT_0444 0.21 +1.6 425,519 - EX28DRAFT_0444 0.84 -0.4 425,519 - EX28DRAFT_0444 0.84 -0.2 425,519 - EX28DRAFT_0444 0.84 +3.7 425,591 - +1.2 425,604 - -0.1 425,616 + -0.4 425,616 + +0.5 425,616 + -0.3 425,616 + +0.9 425,616 + +1.1 425,616 + -0.2 425,617 - +0.5 425,619 - +1.3 425,915 - EX28DRAFT_0445 0.15 +1.1 425,925 + EX28DRAFT_0445 0.15 -2.7 425,925 + EX28DRAFT_0445 0.15 +2.2 425,925 + EX28DRAFT_0445 0.15 -1.1 425,926 - EX28DRAFT_0445 0.15 +0.1 425,926 - EX28DRAFT_0445 0.15 -0.3 425,987 + EX28DRAFT_0445 0.18 -0.8 425,988 - EX28DRAFT_0445 0.18 -1.5 426,001 + EX28DRAFT_0445 0.19 +1.3 426,002 - EX28DRAFT_0445 0.19 +0.6 426,248 + EX28DRAFT_0445 0.30 -0.4 426,278 + EX28DRAFT_0445 0.31 -0.3 426,332 + EX28DRAFT_0445 0.34 +0.0 426,332 + EX28DRAFT_0445 0.34 +0.4 426,333 - EX28DRAFT_0445 0.34 -0.1 426,333 - EX28DRAFT_0445 0.34 -0.2 426,335 + EX28DRAFT_0445 0.34 +0.1 426,365 + EX28DRAFT_0445 0.35 -0.9 426,426 - EX28DRAFT_0445 0.38 -0.3 426,499 + EX28DRAFT_0445 0.42 +0.8 426,499 + EX28DRAFT_0445 0.42 +0.1 426,500 - EX28DRAFT_0445 0.42 -1.1 426,500 - EX28DRAFT_0445 0.42 -0.2 426,500 - EX28DRAFT_0445 0.42 -1.5 426,749 - EX28DRAFT_0445 0.53 -0.8 426,750 + EX28DRAFT_0445 0.53 +2.0 426,750 + EX28DRAFT_0445 0.53 -0.5 426,751 - EX28DRAFT_0445 0.53 -0.6 426,785 + EX28DRAFT_0445 0.55 +0.2 426,822 - EX28DRAFT_0445 0.56 -2.4 426,881 - EX28DRAFT_0445 0.59 -2.0 426,883 + EX28DRAFT_0445 0.59 -1.6 426,884 - EX28DRAFT_0445 0.59 +1.0 426,887 + EX28DRAFT_0445 0.59 -0.4 426,888 - EX28DRAFT_0445 0.59 +0.2 426,888 - EX28DRAFT_0445 0.59 +1.0 426,888 - EX28DRAFT_0445 0.59 +0.4 426,888 - EX28DRAFT_0445 0.59 +0.3 426,888 - EX28DRAFT_0445 0.59 -0.1 426,954 - EX28DRAFT_0445 0.62 +0.7 427,121 + EX28DRAFT_0445 0.70 -0.5 427,122 - EX28DRAFT_0445 0.70 -0.1 427,166 + EX28DRAFT_0445 0.72 -0.5 427,166 + EX28DRAFT_0445 0.72 +0.8 427,290 - EX28DRAFT_0445 0.78 -0.3 427,302 - EX28DRAFT_0445 0.78 -0.4 427,314 + EX28DRAFT_0445 0.79 -0.1 427,314 + EX28DRAFT_0445 0.79 -1.9 427,314 + EX28DRAFT_0445 0.79 +0.9 427,450 + EX28DRAFT_0445 0.85 -1.8 427,450 + EX28DRAFT_0445 0.85 +0.2 427,450 + EX28DRAFT_0445 0.85 +0.2 427,450 + EX28DRAFT_0445 0.85 -0.2 427,451 - EX28DRAFT_0445 0.85 +1.7 427,505 - EX28DRAFT_0445 0.88 +0.2 427,505 - EX28DRAFT_0445 0.88 +0.4 427,722 + +1.0 427,722 + +0.9 427,723 - +0.8 427,725 + +0.5 427,726 - -0.3 427,739 + +0.3 427,760 + +1.1 427,760 + -0.4 427,771 - +0.5 427,792 + +1.0 428,016 + EX28DRAFT_0446 0.32 +0.0 428,053 + EX28DRAFT_0446 0.40 +0.9 428,079 - EX28DRAFT_0446 0.45 -0.0 428,139 + EX28DRAFT_0446 0.56 -1.0 428,140 - EX28DRAFT_0446 0.56 +1.0 428,258 + EX28DRAFT_0446 0.79 +1.4 428,302 - EX28DRAFT_0446 0.88 +0.8 428,334 - -0.7 428,367 + -1.0 428,401 + -1.3 428,402 - -0.6 428,402 - -0.5 428,402 - -0.5 428,655 - EX28DRAFT_0447 0.17 +3.6
Or see this region's nucleotide sequence