Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0369 and EX28DRAFT_0370 are separated by 209 nucleotides EX28DRAFT_0370 and EX28DRAFT_0371 are separated by 138 nucleotides EX28DRAFT_0371 and EX28DRAFT_0372 are separated by 35 nucleotides EX28DRAFT_0372 and EX28DRAFT_0373 are separated by 72 nucleotides
EX28DRAFT_0369: EX28DRAFT_0369 - Serine protease inhibitor ecotin, at 341,743 to 342,246
_0369
EX28DRAFT_0370: EX28DRAFT_0370 - Protein of unknown function (DUF2534), at 342,456 to 342,716
_0370
EX28DRAFT_0371: EX28DRAFT_0371 - Arabinose efflux permease, at 342,855 to 344,042
_0371
EX28DRAFT_0372: EX28DRAFT_0372 - tRNA, at 344,078 to 344,154
_0372
EX28DRAFT_0373: EX28DRAFT_0373 - Predicted hydrolase of alkaline phosphatase superfamily, at 344,227 to 345,987
_0373
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 341.874 kb on - strand, within EX28DRAFT_0369 at 341.958 kb on - strand, within EX28DRAFT_0369 at 342.063 kb on + strand, within EX28DRAFT_0369 at 342.258 kb on + strand at 342.259 kb on - strand at 342.316 kb on - strand at 342.421 kb on + strand at 342.421 kb on + strand at 342.421 kb on + strand at 342.422 kb on - strand at 342.423 kb on + strand at 342.425 kb on + strand at 342.425 kb on + strand at 342.426 kb on - strand at 342.426 kb on - strand at 342.426 kb on - strand at 342.426 kb on - strand at 342.431 kb on + strand at 342.432 kb on - strand at 342.518 kb on - strand, within EX28DRAFT_0370 at 342.521 kb on + strand, within EX28DRAFT_0370 at 342.521 kb on + strand, within EX28DRAFT_0370 at 342.576 kb on + strand, within EX28DRAFT_0370 at 342.576 kb on + strand, within EX28DRAFT_0370 at 342.577 kb on - strand, within EX28DRAFT_0370 at 342.577 kb on - strand, within EX28DRAFT_0370 at 342.581 kb on + strand, within EX28DRAFT_0370 at 342.581 kb on + strand, within EX28DRAFT_0370 at 342.581 kb on + strand, within EX28DRAFT_0370 at 342.612 kb on + strand, within EX28DRAFT_0370 at 342.612 kb on + strand, within EX28DRAFT_0370 at 342.612 kb on + strand, within EX28DRAFT_0370 at 342.612 kb on + strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.613 kb on - strand, within EX28DRAFT_0370 at 342.643 kb on - strand, within EX28DRAFT_0370 at 342.715 kb on - strand at 342.731 kb on + strand at 342.735 kb on + strand at 342.736 kb on - strand at 342.736 kb on - strand at 342.809 kb on + strand at 342.920 kb on + strand at 342.921 kb on - strand at 342.933 kb on - strand at 342.947 kb on + strand at 342.947 kb on + strand at 342.971 kb on + strand at 343.047 kb on - strand, within EX28DRAFT_0371 at 343.050 kb on - strand, within EX28DRAFT_0371 at 343.092 kb on - strand, within EX28DRAFT_0371 at 343.113 kb on + strand, within EX28DRAFT_0371 at 343.325 kb on - strand, within EX28DRAFT_0371 at 343.334 kb on - strand, within EX28DRAFT_0371 at 343.339 kb on + strand, within EX28DRAFT_0371 at 343.419 kb on + strand, within EX28DRAFT_0371 at 343.419 kb on + strand, within EX28DRAFT_0371 at 343.463 kb on + strand, within EX28DRAFT_0371 at 343.464 kb on - strand, within EX28DRAFT_0371 at 343.464 kb on - strand, within EX28DRAFT_0371 at 343.467 kb on - strand, within EX28DRAFT_0371 at 343.467 kb on - strand, within EX28DRAFT_0371 at 343.611 kb on - strand, within EX28DRAFT_0371 at 343.644 kb on + strand, within EX28DRAFT_0371 at 343.645 kb on - strand, within EX28DRAFT_0371 at 343.645 kb on - strand, within EX28DRAFT_0371 at 343.780 kb on + strand, within EX28DRAFT_0371 at 343.801 kb on + strand, within EX28DRAFT_0371 at 343.801 kb on + strand, within EX28DRAFT_0371 at 343.801 kb on + strand, within EX28DRAFT_0371 at 343.802 kb on - strand, within EX28DRAFT_0371 at 343.802 kb on - strand, within EX28DRAFT_0371 at 343.805 kb on + strand, within EX28DRAFT_0371 at 343.805 kb on + strand, within EX28DRAFT_0371 at 343.805 kb on + strand, within EX28DRAFT_0371 at 343.805 kb on + strand, within EX28DRAFT_0371 at 343.805 kb on + strand, within EX28DRAFT_0371 at 343.805 kb on + strand, within EX28DRAFT_0371 at 343.805 kb on + strand, within EX28DRAFT_0371 at 343.806 kb on - strand, within EX28DRAFT_0371 at 343.806 kb on - strand, within EX28DRAFT_0371 at 343.912 kb on + strand, within EX28DRAFT_0371 at 343.967 kb on + strand at 343.967 kb on + strand at 344.010 kb on + strand at 344.010 kb on + strand at 344.010 kb on + strand at 344.011 kb on - strand at 344.011 kb on - strand at 344.319 kb on + strand at 344.320 kb on - strand at 344.320 kb on - strand at 344.320 kb on - strand at 344.320 kb on - strand at 344.321 kb on + strand at 344.321 kb on + strand at 344.322 kb on - strand at 344.385 kb on + strand at 344.385 kb on + strand at 344.388 kb on + strand at 344.389 kb on - strand at 344.515 kb on - strand, within EX28DRAFT_0373 at 344.515 kb on - strand, within EX28DRAFT_0373 at 344.529 kb on + strand, within EX28DRAFT_0373 at 344.604 kb on + strand, within EX28DRAFT_0373 at 344.604 kb on + strand, within EX28DRAFT_0373 at 344.715 kb on + strand, within EX28DRAFT_0373 at 344.763 kb on + strand, within EX28DRAFT_0373 at 344.764 kb on - strand, within EX28DRAFT_0373 at 344.965 kb on + strand, within EX28DRAFT_0373 at 344.973 kb on - strand, within EX28DRAFT_0373 at 345.026 kb on - strand, within EX28DRAFT_0373 at 345.026 kb on - strand, within EX28DRAFT_0373 at 345.036 kb on + strand, within EX28DRAFT_0373 at 345.036 kb on + strand, within EX28DRAFT_0373 at 345.038 kb on + strand, within EX28DRAFT_0373 at 345.039 kb on - strand, within EX28DRAFT_0373
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 341,874 - EX28DRAFT_0369 0.26 -0.9 341,958 - EX28DRAFT_0369 0.43 +0.8 342,063 + EX28DRAFT_0369 0.63 +0.3 342,258 + -0.5 342,259 - +1.3 342,316 - +0.4 342,421 + +0.6 342,421 + +1.6 342,421 + +0.2 342,422 - +0.3 342,423 + +1.5 342,425 + -2.7 342,425 + -0.6 342,426 - +0.1 342,426 - -0.4 342,426 - +1.4 342,426 - +0.2 342,431 + -3.5 342,432 - +0.1 342,518 - EX28DRAFT_0370 0.24 -0.7 342,521 + EX28DRAFT_0370 0.25 +0.1 342,521 + EX28DRAFT_0370 0.25 -2.0 342,576 + EX28DRAFT_0370 0.46 +1.7 342,576 + EX28DRAFT_0370 0.46 -0.1 342,577 - EX28DRAFT_0370 0.46 -0.6 342,577 - EX28DRAFT_0370 0.46 +0.8 342,581 + EX28DRAFT_0370 0.48 -0.8 342,581 + EX28DRAFT_0370 0.48 -1.5 342,581 + EX28DRAFT_0370 0.48 +2.7 342,612 + EX28DRAFT_0370 0.60 +0.2 342,612 + EX28DRAFT_0370 0.60 +0.1 342,612 + EX28DRAFT_0370 0.60 +3.1 342,612 + EX28DRAFT_0370 0.60 +0.4 342,613 - EX28DRAFT_0370 0.60 -0.3 342,613 - EX28DRAFT_0370 0.60 +0.6 342,613 - EX28DRAFT_0370 0.60 -1.6 342,613 - EX28DRAFT_0370 0.60 -0.5 342,613 - EX28DRAFT_0370 0.60 -1.7 342,643 - EX28DRAFT_0370 0.72 -1.3 342,715 - -1.8 342,731 + -0.1 342,735 + -2.1 342,736 - -2.8 342,736 - -1.1 342,809 + +0.8 342,920 + +1.1 342,921 - +0.6 342,933 - +1.9 342,947 + -1.4 342,947 + +0.5 342,971 + -0.1 343,047 - EX28DRAFT_0371 0.16 -0.2 343,050 - EX28DRAFT_0371 0.16 -0.2 343,092 - EX28DRAFT_0371 0.20 -1.8 343,113 + EX28DRAFT_0371 0.22 +0.4 343,325 - EX28DRAFT_0371 0.40 -0.4 343,334 - EX28DRAFT_0371 0.40 -1.0 343,339 + EX28DRAFT_0371 0.41 -1.9 343,419 + EX28DRAFT_0371 0.47 +0.9 343,419 + EX28DRAFT_0371 0.47 -0.4 343,463 + EX28DRAFT_0371 0.51 -0.5 343,464 - EX28DRAFT_0371 0.51 -2.1 343,464 - EX28DRAFT_0371 0.51 +0.5 343,467 - EX28DRAFT_0371 0.52 +1.1 343,467 - EX28DRAFT_0371 0.52 -2.1 343,611 - EX28DRAFT_0371 0.64 -0.6 343,644 + EX28DRAFT_0371 0.66 +0.8 343,645 - EX28DRAFT_0371 0.66 -0.7 343,645 - EX28DRAFT_0371 0.66 +0.8 343,780 + EX28DRAFT_0371 0.78 -0.3 343,801 + EX28DRAFT_0371 0.80 +0.3 343,801 + EX28DRAFT_0371 0.80 -0.6 343,801 + EX28DRAFT_0371 0.80 -0.6 343,802 - EX28DRAFT_0371 0.80 -0.0 343,802 - EX28DRAFT_0371 0.80 +0.9 343,805 + EX28DRAFT_0371 0.80 -0.2 343,805 + EX28DRAFT_0371 0.80 -1.9 343,805 + EX28DRAFT_0371 0.80 -0.7 343,805 + EX28DRAFT_0371 0.80 +0.4 343,805 + EX28DRAFT_0371 0.80 -0.2 343,805 + EX28DRAFT_0371 0.80 -1.8 343,805 + EX28DRAFT_0371 0.80 -2.1 343,806 - EX28DRAFT_0371 0.80 -1.5 343,806 - EX28DRAFT_0371 0.80 -0.2 343,912 + EX28DRAFT_0371 0.89 -3.4 343,967 + +0.2 343,967 + +1.9 344,010 + -2.0 344,010 + -0.4 344,010 + -2.2 344,011 - +0.2 344,011 - +0.1 344,319 + +0.0 344,320 - -1.2 344,320 - -2.5 344,320 - +1.3 344,320 - +0.5 344,321 + +1.4 344,321 + -0.5 344,322 - -1.1 344,385 + +0.5 344,385 + -0.9 344,388 + -0.7 344,389 - -1.5 344,515 - EX28DRAFT_0373 0.16 -1.8 344,515 - EX28DRAFT_0373 0.16 -0.5 344,529 + EX28DRAFT_0373 0.17 -0.1 344,604 + EX28DRAFT_0373 0.21 +0.8 344,604 + EX28DRAFT_0373 0.21 -1.4 344,715 + EX28DRAFT_0373 0.28 -1.1 344,763 + EX28DRAFT_0373 0.30 -0.7 344,764 - EX28DRAFT_0373 0.30 -3.7 344,965 + EX28DRAFT_0373 0.42 +0.2 344,973 - EX28DRAFT_0373 0.42 -1.5 345,026 - EX28DRAFT_0373 0.45 -0.0 345,026 - EX28DRAFT_0373 0.45 -1.0 345,036 + EX28DRAFT_0373 0.46 -0.6 345,036 + EX28DRAFT_0373 0.46 -1.0 345,038 + EX28DRAFT_0373 0.46 +0.2 345,039 - EX28DRAFT_0373 0.46 -1.4
Or see this region's nucleotide sequence