Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0339 and EX28DRAFT_0340 are separated by 88 nucleotides EX28DRAFT_0340 and EX28DRAFT_0341 overlap by 4 nucleotides EX28DRAFT_0341 and EX28DRAFT_0342 overlap by 4 nucleotides
EX28DRAFT_0339: EX28DRAFT_0339 - isochorismate synthase (EC 5.4.4.2), at 300,616 to 301,911
_0339
EX28DRAFT_0340: EX28DRAFT_0340 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 302,000 to 303,670
_0340
EX28DRAFT_0341: EX28DRAFT_0341 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase, at 303,667 to 304,443
_0341
EX28DRAFT_0342: EX28DRAFT_0342 - 1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36), at 304,440 to 305,297
_0342
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 301.071 kb on + strand, within EX28DRAFT_0339 at 301.072 kb on - strand, within EX28DRAFT_0339 at 301.271 kb on + strand, within EX28DRAFT_0339 at 301.279 kb on + strand, within EX28DRAFT_0339 at 301.470 kb on + strand, within EX28DRAFT_0339 at 301.470 kb on + strand, within EX28DRAFT_0339 at 301.488 kb on + strand, within EX28DRAFT_0339 at 301.529 kb on + strand, within EX28DRAFT_0339 at 301.558 kb on - strand, within EX28DRAFT_0339 at 301.632 kb on - strand, within EX28DRAFT_0339 at 301.739 kb on + strand, within EX28DRAFT_0339 at 301.824 kb on + strand at 301.872 kb on + strand at 301.910 kb on - strand at 301.937 kb on + strand at 301.965 kb on + strand at 301.965 kb on + strand at 301.966 kb on - strand at 301.966 kb on - strand at 301.966 kb on - strand at 301.968 kb on - strand at 302.018 kb on - strand at 302.081 kb on - strand at 302.081 kb on - strand at 302.081 kb on - strand at 302.304 kb on + strand, within EX28DRAFT_0340 at 302.425 kb on + strand, within EX28DRAFT_0340 at 302.426 kb on - strand, within EX28DRAFT_0340 at 302.426 kb on - strand, within EX28DRAFT_0340 at 302.495 kb on - strand, within EX28DRAFT_0340 at 302.522 kb on + strand, within EX28DRAFT_0340 at 302.915 kb on + strand, within EX28DRAFT_0340 at 303.521 kb on + strand at 303.797 kb on - strand, within EX28DRAFT_0341 at 304.108 kb on + strand, within EX28DRAFT_0341 at 304.277 kb on - strand, within EX28DRAFT_0341 at 304.277 kb on - strand, within EX28DRAFT_0341 at 304.439 kb on + strand at 304.439 kb on + strand at 304.439 kb on + strand at 304.440 kb on - strand at 304.440 kb on - strand at 304.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 301,071 + EX28DRAFT_0339 0.35 +0.4 301,072 - EX28DRAFT_0339 0.35 -0.2 301,271 + EX28DRAFT_0339 0.51 -0.3 301,279 + EX28DRAFT_0339 0.51 +1.3 301,470 + EX28DRAFT_0339 0.66 +0.6 301,470 + EX28DRAFT_0339 0.66 +0.8 301,488 + EX28DRAFT_0339 0.67 +0.3 301,529 + EX28DRAFT_0339 0.70 -1.5 301,558 - EX28DRAFT_0339 0.73 +0.8 301,632 - EX28DRAFT_0339 0.78 -1.1 301,739 + EX28DRAFT_0339 0.87 +1.6 301,824 + +1.3 301,872 + +0.4 301,910 - -0.9 301,937 + -0.7 301,965 + -0.8 301,965 + +0.7 301,966 - +0.0 301,966 - +0.3 301,966 - +1.0 301,968 - +3.3 302,018 - +0.8 302,081 - +4.3 302,081 - +0.6 302,081 - +0.8 302,304 + EX28DRAFT_0340 0.18 +0.5 302,425 + EX28DRAFT_0340 0.25 -0.7 302,426 - EX28DRAFT_0340 0.25 +1.0 302,426 - EX28DRAFT_0340 0.25 +0.1 302,495 - EX28DRAFT_0340 0.30 +2.3 302,522 + EX28DRAFT_0340 0.31 -0.1 302,915 + EX28DRAFT_0340 0.55 -1.0 303,521 + -0.4 303,797 - EX28DRAFT_0341 0.17 +0.7 304,108 + EX28DRAFT_0341 0.57 +0.3 304,277 - EX28DRAFT_0341 0.79 -0.6 304,277 - EX28DRAFT_0341 0.79 -0.5 304,439 + -3.1 304,439 + +0.1 304,439 + +1.0 304,440 - -1.5 304,440 - -0.2 304,446 + +0.1
Or see this region's nucleotide sequence