Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0306 and EX28DRAFT_0307 are separated by 234 nucleotides EX28DRAFT_0307 and EX28DRAFT_0308 are separated by 80 nucleotides EX28DRAFT_0308 and EX28DRAFT_0309 are separated by 21 nucleotides
EX28DRAFT_0306: EX28DRAFT_0306 - transcriptional regulator, LacI family, at 265,432 to 266,451
_0306
EX28DRAFT_0307: EX28DRAFT_0307 - Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type), at 266,686 to 267,129
_0307
EX28DRAFT_0308: EX28DRAFT_0308 - Phosphotransferase system, galactitol-specific IIB component, at 267,210 to 267,482
_0308
EX28DRAFT_0309: EX28DRAFT_0309 - Uncharacterized protein conserved in bacteria, at 267,504 to 268,895
_0309
Position (kb) 266
267
268 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 265.800 kb on + strand, within EX28DRAFT_0306 at 265.800 kb on + strand, within EX28DRAFT_0306 at 265.800 kb on + strand, within EX28DRAFT_0306 at 265.800 kb on + strand, within EX28DRAFT_0306 at 265.801 kb on - strand, within EX28DRAFT_0306 at 265.801 kb on - strand, within EX28DRAFT_0306 at 265.801 kb on - strand, within EX28DRAFT_0306 at 265.801 kb on - strand, within EX28DRAFT_0306 at 265.885 kb on - strand, within EX28DRAFT_0306 at 265.925 kb on + strand, within EX28DRAFT_0306 at 265.925 kb on + strand, within EX28DRAFT_0306 at 265.926 kb on - strand, within EX28DRAFT_0306 at 265.959 kb on + strand, within EX28DRAFT_0306 at 265.960 kb on - strand, within EX28DRAFT_0306 at 265.960 kb on - strand, within EX28DRAFT_0306 at 266.040 kb on + strand, within EX28DRAFT_0306 at 266.040 kb on + strand, within EX28DRAFT_0306 at 266.041 kb on - strand, within EX28DRAFT_0306 at 266.074 kb on - strand, within EX28DRAFT_0306 at 266.164 kb on + strand, within EX28DRAFT_0306 at 266.218 kb on - strand, within EX28DRAFT_0306 at 266.218 kb on - strand, within EX28DRAFT_0306 at 266.283 kb on + strand, within EX28DRAFT_0306 at 266.283 kb on + strand, within EX28DRAFT_0306 at 266.284 kb on - strand, within EX28DRAFT_0306 at 266.285 kb on + strand, within EX28DRAFT_0306 at 266.285 kb on + strand, within EX28DRAFT_0306 at 266.285 kb on + strand, within EX28DRAFT_0306 at 266.324 kb on - strand, within EX28DRAFT_0306 at 266.324 kb on - strand, within EX28DRAFT_0306 at 266.451 kb on + strand at 266.451 kb on + strand at 266.451 kb on + strand at 266.452 kb on - strand at 266.452 kb on - strand at 266.452 kb on - strand at 266.452 kb on - strand at 266.510 kb on - strand at 266.512 kb on - strand at 266.512 kb on - strand at 266.512 kb on - strand at 266.519 kb on - strand at 266.664 kb on + strand at 266.705 kb on - strand at 266.849 kb on - strand, within EX28DRAFT_0307 at 266.851 kb on + strand, within EX28DRAFT_0307 at 266.851 kb on + strand, within EX28DRAFT_0307 at 266.851 kb on + strand, within EX28DRAFT_0307 at 266.852 kb on - strand, within EX28DRAFT_0307 at 266.852 kb on - strand, within EX28DRAFT_0307 at 266.852 kb on - strand, within EX28DRAFT_0307 at 266.928 kb on - strand, within EX28DRAFT_0307 at 266.986 kb on - strand, within EX28DRAFT_0307 at 266.986 kb on - strand, within EX28DRAFT_0307 at 267.013 kb on - strand, within EX28DRAFT_0307 at 267.106 kb on - strand at 267.133 kb on - strand at 267.198 kb on - strand at 267.273 kb on - strand, within EX28DRAFT_0308 at 267.504 kb on - strand at 267.510 kb on - strand at 267.540 kb on - strand at 267.711 kb on - strand, within EX28DRAFT_0309 at 267.787 kb on - strand, within EX28DRAFT_0309 at 267.833 kb on + strand, within EX28DRAFT_0309 at 267.894 kb on + strand, within EX28DRAFT_0309 at 267.894 kb on + strand, within EX28DRAFT_0309 at 267.894 kb on + strand, within EX28DRAFT_0309 at 267.897 kb on - strand, within EX28DRAFT_0309 at 268.078 kb on - strand, within EX28DRAFT_0309
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 265,800 + EX28DRAFT_0306 0.36 -1.9 265,800 + EX28DRAFT_0306 0.36 -0.4 265,800 + EX28DRAFT_0306 0.36 -2.8 265,800 + EX28DRAFT_0306 0.36 -0.7 265,801 - EX28DRAFT_0306 0.36 +0.1 265,801 - EX28DRAFT_0306 0.36 -0.9 265,801 - EX28DRAFT_0306 0.36 -1.6 265,801 - EX28DRAFT_0306 0.36 -0.8 265,885 - EX28DRAFT_0306 0.44 -0.9 265,925 + EX28DRAFT_0306 0.48 +0.2 265,925 + EX28DRAFT_0306 0.48 -2.2 265,926 - EX28DRAFT_0306 0.48 -3.9 265,959 + EX28DRAFT_0306 0.52 -0.9 265,960 - EX28DRAFT_0306 0.52 -1.0 265,960 - EX28DRAFT_0306 0.52 -0.6 266,040 + EX28DRAFT_0306 0.60 -1.8 266,040 + EX28DRAFT_0306 0.60 -2.1 266,041 - EX28DRAFT_0306 0.60 -0.6 266,074 - EX28DRAFT_0306 0.63 -2.2 266,164 + EX28DRAFT_0306 0.72 +0.4 266,218 - EX28DRAFT_0306 0.77 -4.5 266,218 - EX28DRAFT_0306 0.77 -0.3 266,283 + EX28DRAFT_0306 0.83 -1.1 266,283 + EX28DRAFT_0306 0.83 -3.1 266,284 - EX28DRAFT_0306 0.84 -0.2 266,285 + EX28DRAFT_0306 0.84 -1.1 266,285 + EX28DRAFT_0306 0.84 -2.3 266,285 + EX28DRAFT_0306 0.84 -1.4 266,324 - EX28DRAFT_0306 0.87 -1.6 266,324 - EX28DRAFT_0306 0.87 -0.4 266,451 + -0.4 266,451 + -0.7 266,451 + -2.9 266,452 - -1.0 266,452 - -0.5 266,452 - -0.1 266,452 - -1.9 266,510 - +0.3 266,512 - +0.7 266,512 - +1.0 266,512 - +0.4 266,519 - +0.4 266,664 + -2.9 266,705 - -0.6 266,849 - EX28DRAFT_0307 0.37 +1.0 266,851 + EX28DRAFT_0307 0.37 -0.0 266,851 + EX28DRAFT_0307 0.37 -0.6 266,851 + EX28DRAFT_0307 0.37 +1.9 266,852 - EX28DRAFT_0307 0.37 -0.5 266,852 - EX28DRAFT_0307 0.37 +0.3 266,852 - EX28DRAFT_0307 0.37 -0.2 266,928 - EX28DRAFT_0307 0.55 -0.3 266,986 - EX28DRAFT_0307 0.68 +1.5 266,986 - EX28DRAFT_0307 0.68 +0.2 267,013 - EX28DRAFT_0307 0.74 -3.7 267,106 - +0.4 267,133 - -2.2 267,198 - +0.5 267,273 - EX28DRAFT_0308 0.23 +1.2 267,504 - -0.3 267,510 - -2.5 267,540 - +0.4 267,711 - EX28DRAFT_0309 0.15 -1.1 267,787 - EX28DRAFT_0309 0.20 +0.5 267,833 + EX28DRAFT_0309 0.24 +0.6 267,894 + EX28DRAFT_0309 0.28 +0.6 267,894 + EX28DRAFT_0309 0.28 -1.8 267,894 + EX28DRAFT_0309 0.28 -1.3 267,897 - EX28DRAFT_0309 0.28 +0.6 268,078 - EX28DRAFT_0309 0.41 +0.7
Or see this region's nucleotide sequence