Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0277 and EX28DRAFT_0278 overlap by 1 nucleotides EX28DRAFT_0278 and EX28DRAFT_0279 are separated by 13 nucleotides EX28DRAFT_0279 and EX28DRAFT_0280 are separated by 57 nucleotides EX28DRAFT_0280 and EX28DRAFT_0281 are separated by 158 nucleotides
EX28DRAFT_0277: EX28DRAFT_0277 - Predicted permeases, at 239,096 to 239,905
_0277
EX28DRAFT_0278: EX28DRAFT_0278 - Uncharacterized protein conserved in bacteria, at 239,905 to 240,450
_0278
EX28DRAFT_0279: EX28DRAFT_0279 - YfcL protein, at 240,464 to 240,742
_0279
EX28DRAFT_0280: EX28DRAFT_0280 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain, at 240,800 to 242,797
_0280
EX28DRAFT_0281: EX28DRAFT_0281 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 242,956 to 244,173
_0281
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 239.806 kb on + strand, within EX28DRAFT_0277 at 239.903 kb on + strand at 239.913 kb on + strand at 239.913 kb on + strand at 239.913 kb on + strand at 239.924 kb on - strand at 240.007 kb on + strand, within EX28DRAFT_0278 at 240.007 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.036 kb on + strand, within EX28DRAFT_0278 at 240.065 kb on - strand, within EX28DRAFT_0278 at 240.394 kb on + strand, within EX28DRAFT_0278 at 240.395 kb on - strand, within EX28DRAFT_0278 at 240.395 kb on - strand, within EX28DRAFT_0278 at 240.398 kb on - strand at 240.448 kb on + strand at 240.740 kb on + strand at 240.741 kb on - strand at 240.970 kb on + strand at 240.970 kb on + strand at 240.970 kb on + strand at 240.972 kb on + strand at 240.972 kb on + strand at 240.972 kb on + strand at 240.973 kb on - strand at 240.973 kb on - strand at 240.973 kb on - strand at 241.033 kb on - strand, within EX28DRAFT_0280 at 241.240 kb on - strand, within EX28DRAFT_0280 at 241.285 kb on + strand, within EX28DRAFT_0280 at 241.285 kb on + strand, within EX28DRAFT_0280 at 241.286 kb on - strand, within EX28DRAFT_0280 at 241.299 kb on + strand, within EX28DRAFT_0280 at 241.345 kb on + strand, within EX28DRAFT_0280 at 241.352 kb on + strand, within EX28DRAFT_0280 at 241.353 kb on - strand, within EX28DRAFT_0280 at 241.353 kb on - strand, within EX28DRAFT_0280 at 241.515 kb on + strand, within EX28DRAFT_0280 at 241.789 kb on - strand, within EX28DRAFT_0280 at 242.174 kb on - strand, within EX28DRAFT_0280 at 242.343 kb on - strand, within EX28DRAFT_0280 at 242.513 kb on + strand, within EX28DRAFT_0280 at 242.513 kb on + strand, within EX28DRAFT_0280 at 242.679 kb on + strand at 242.679 kb on + strand at 242.707 kb on + strand at 242.715 kb on + strand at 242.746 kb on + strand at 242.746 kb on + strand at 242.780 kb on + strand at 242.780 kb on + strand at 242.781 kb on - strand at 242.783 kb on - strand at 242.799 kb on + strand at 242.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 239,806 + EX28DRAFT_0277 0.88 +1.4 239,903 + +0.2 239,913 + +0.2 239,913 + -1.7 239,913 + +0.4 239,924 - +1.4 240,007 + EX28DRAFT_0278 0.19 -0.6 240,007 + EX28DRAFT_0278 0.19 -1.4 240,034 + EX28DRAFT_0278 0.24 -0.0 240,034 + EX28DRAFT_0278 0.24 -0.3 240,034 + EX28DRAFT_0278 0.24 +4.1 240,036 + EX28DRAFT_0278 0.24 +0.1 240,065 - EX28DRAFT_0278 0.29 +0.3 240,394 + EX28DRAFT_0278 0.90 -0.6 240,395 - EX28DRAFT_0278 0.90 -0.3 240,395 - EX28DRAFT_0278 0.90 -1.6 240,398 - -3.6 240,448 + +0.5 240,740 + -1.6 240,741 - +2.3 240,970 + +0.7 240,970 + -1.3 240,970 + +0.8 240,972 + +0.0 240,972 + -0.5 240,972 + -0.7 240,973 - +1.0 240,973 - +2.0 240,973 - -1.0 241,033 - EX28DRAFT_0280 0.12 +0.3 241,240 - EX28DRAFT_0280 0.22 +0.7 241,285 + EX28DRAFT_0280 0.24 +1.0 241,285 + EX28DRAFT_0280 0.24 -1.2 241,286 - EX28DRAFT_0280 0.24 +0.8 241,299 + EX28DRAFT_0280 0.25 +0.4 241,345 + EX28DRAFT_0280 0.27 +0.1 241,352 + EX28DRAFT_0280 0.28 -2.4 241,353 - EX28DRAFT_0280 0.28 +2.1 241,353 - EX28DRAFT_0280 0.28 -0.6 241,515 + EX28DRAFT_0280 0.36 +1.0 241,789 - EX28DRAFT_0280 0.49 +0.9 242,174 - EX28DRAFT_0280 0.69 -0.4 242,343 - EX28DRAFT_0280 0.77 +0.2 242,513 + EX28DRAFT_0280 0.86 +0.2 242,513 + EX28DRAFT_0280 0.86 -1.1 242,679 + -0.5 242,679 + +1.9 242,707 + +0.2 242,715 + +0.5 242,746 + -0.4 242,746 + -0.2 242,780 + -0.6 242,780 + -1.3 242,781 - +1.3 242,783 - +0.5 242,799 + -1.2 242,800 - -0.8
Or see this region's nucleotide sequence