Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0239

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0237 and EX28DRAFT_0238 are separated by 35 nucleotidesEX28DRAFT_0238 and EX28DRAFT_0239 are separated by 3 nucleotidesEX28DRAFT_0239 and EX28DRAFT_0240 are separated by 386 nucleotides EX28DRAFT_0237: EX28DRAFT_0237 - glucokinase, proteobacterial type, at 189,288 to 190,253 _0237 EX28DRAFT_0238: EX28DRAFT_0238 - two component transcriptional regulator, LytTR family, at 190,289 to 191,014 _0238 EX28DRAFT_0239: EX28DRAFT_0239 - Putative regulator of cell autolysis, at 191,018 to 192,724 _0239 EX28DRAFT_0240: EX28DRAFT_0240 - Aspartate/tyrosine/aromatic aminotransferase, at 193,111 to 194,349 _0240 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 190.062 kb on + strand, within EX28DRAFT_0237at 190.063 kb on - strand, within EX28DRAFT_0237at 190.065 kb on - strand, within EX28DRAFT_0237at 190.155 kb on + strand, within EX28DRAFT_0237at 190.155 kb on + strand, within EX28DRAFT_0237at 190.155 kb on + strand, within EX28DRAFT_0237at 190.156 kb on - strand, within EX28DRAFT_0237at 190.374 kb on + strand, within EX28DRAFT_0238at 190.375 kb on - strand, within EX28DRAFT_0238at 190.375 kb on - strand, within EX28DRAFT_0238at 190.416 kb on - strand, within EX28DRAFT_0238at 190.503 kb on + strand, within EX28DRAFT_0238at 190.504 kb on - strand, within EX28DRAFT_0238at 190.557 kb on + strand, within EX28DRAFT_0238at 190.557 kb on + strand, within EX28DRAFT_0238at 190.558 kb on - strand, within EX28DRAFT_0238at 190.608 kb on - strand, within EX28DRAFT_0238at 190.608 kb on - strand, within EX28DRAFT_0238at 190.608 kb on - strand, within EX28DRAFT_0238at 190.720 kb on + strand, within EX28DRAFT_0238at 190.720 kb on + strand, within EX28DRAFT_0238at 190.722 kb on + strand, within EX28DRAFT_0238at 190.786 kb on + strand, within EX28DRAFT_0238at 190.795 kb on + strand, within EX28DRAFT_0238at 190.829 kb on + strand, within EX28DRAFT_0238at 190.856 kb on - strand, within EX28DRAFT_0238at 190.997 kb on + strandat 190.997 kb on + strandat 190.998 kb on - strandat 190.998 kb on - strandat 191.005 kb on + strandat 191.036 kb on + strandat 191.079 kb on + strandat 191.400 kb on + strand, within EX28DRAFT_0239at 191.401 kb on - strand, within EX28DRAFT_0239at 191.448 kb on + strand, within EX28DRAFT_0239at 191.448 kb on + strand, within EX28DRAFT_0239at 191.448 kb on + strand, within EX28DRAFT_0239at 191.449 kb on - strand, within EX28DRAFT_0239at 191.464 kb on - strand, within EX28DRAFT_0239at 191.464 kb on - strand, within EX28DRAFT_0239at 191.621 kb on - strand, within EX28DRAFT_0239at 191.654 kb on - strand, within EX28DRAFT_0239at 191.654 kb on - strand, within EX28DRAFT_0239at 191.654 kb on - strand, within EX28DRAFT_0239at 191.708 kb on - strand, within EX28DRAFT_0239at 191.708 kb on - strand, within EX28DRAFT_0239at 191.916 kb on - strand, within EX28DRAFT_0239at 191.937 kb on + strand, within EX28DRAFT_0239at 191.938 kb on - strand, within EX28DRAFT_0239at 191.962 kb on - strand, within EX28DRAFT_0239at 191.981 kb on - strand, within EX28DRAFT_0239at 191.981 kb on - strand, within EX28DRAFT_0239at 192.528 kb on - strand, within EX28DRAFT_0239at 192.713 kb on + strandat 192.713 kb on + strandat 192.728 kb on + strandat 192.729 kb on - strandat 192.901 kb on - strandat 192.916 kb on - strandat 193.166 kb on - strandat 193.176 kb on + strandat 193.269 kb on + strand, within EX28DRAFT_0240at 193.270 kb on - strand, within EX28DRAFT_0240at 193.292 kb on + strand, within EX28DRAFT_0240at 193.347 kb on - strand, within EX28DRAFT_0240at 193.520 kb on - strand, within EX28DRAFT_0240

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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190,062 + EX28DRAFT_0237 0.80 +1.4
190,063 - EX28DRAFT_0237 0.80 -0.2
190,065 - EX28DRAFT_0237 0.80 +1.4
190,155 + EX28DRAFT_0237 0.90 +1.1
190,155 + EX28DRAFT_0237 0.90 +1.0
190,155 + EX28DRAFT_0237 0.90 -0.3
190,156 - EX28DRAFT_0237 0.90 -0.9
190,374 + EX28DRAFT_0238 0.12 +1.2
190,375 - EX28DRAFT_0238 0.12 -1.4
190,375 - EX28DRAFT_0238 0.12 -0.3
190,416 - EX28DRAFT_0238 0.17 +0.8
190,503 + EX28DRAFT_0238 0.29 -0.0
190,504 - EX28DRAFT_0238 0.30 +1.7
190,557 + EX28DRAFT_0238 0.37 -0.3
190,557 + EX28DRAFT_0238 0.37 +0.5
190,558 - EX28DRAFT_0238 0.37 -1.6
190,608 - EX28DRAFT_0238 0.44 -0.1
190,608 - EX28DRAFT_0238 0.44 +0.0
190,608 - EX28DRAFT_0238 0.44 -0.1
190,720 + EX28DRAFT_0238 0.59 -3.0
190,720 + EX28DRAFT_0238 0.59 +0.2
190,722 + EX28DRAFT_0238 0.60 -1.2
190,786 + EX28DRAFT_0238 0.68 -0.0
190,795 + EX28DRAFT_0238 0.70 +1.2
190,829 + EX28DRAFT_0238 0.74 +0.8
190,856 - EX28DRAFT_0238 0.78 +0.3
190,997 + -0.1
190,997 + -2.2
190,998 - +3.4
190,998 - +1.5
191,005 + -1.0
191,036 + +0.5
191,079 + +0.3
191,400 + EX28DRAFT_0239 0.22 -0.0
191,401 - EX28DRAFT_0239 0.22 -0.8
191,448 + EX28DRAFT_0239 0.25 +1.3
191,448 + EX28DRAFT_0239 0.25 -0.6
191,448 + EX28DRAFT_0239 0.25 +0.7
191,449 - EX28DRAFT_0239 0.25 +1.1
191,464 - EX28DRAFT_0239 0.26 +0.3
191,464 - EX28DRAFT_0239 0.26 +1.2
191,621 - EX28DRAFT_0239 0.35 -0.2
191,654 - EX28DRAFT_0239 0.37 +0.2
191,654 - EX28DRAFT_0239 0.37 +0.1
191,654 - EX28DRAFT_0239 0.37 +0.9
191,708 - EX28DRAFT_0239 0.40 +0.2
191,708 - EX28DRAFT_0239 0.40 -1.4
191,916 - EX28DRAFT_0239 0.53 +1.5
191,937 + EX28DRAFT_0239 0.54 -0.4
191,938 - EX28DRAFT_0239 0.54 -0.4
191,962 - EX28DRAFT_0239 0.55 +0.2
191,981 - EX28DRAFT_0239 0.56 +0.6
191,981 - EX28DRAFT_0239 0.56 +1.6
192,528 - EX28DRAFT_0239 0.88 +0.1
192,713 + +0.3
192,713 + +0.3
192,728 + +1.1
192,729 - +0.3
192,901 - +1.3
192,916 - +0.8
193,166 - -1.1
193,176 + -0.4
193,269 + EX28DRAFT_0240 0.13 +0.0
193,270 - EX28DRAFT_0240 0.13 +0.0
193,292 + EX28DRAFT_0240 0.15 -0.4
193,347 - EX28DRAFT_0240 0.19 -1.2
193,520 - EX28DRAFT_0240 0.33 +2.0

Or see this region's nucleotide sequence