Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0236 and EX28DRAFT_0237 are separated by 205 nucleotides EX28DRAFT_0237 and EX28DRAFT_0238 are separated by 35 nucleotides EX28DRAFT_0238 and EX28DRAFT_0239 are separated by 3 nucleotides
EX28DRAFT_0236: EX28DRAFT_0236 - Chloride channel protein EriC, at 187,847 to 189,082
_0236
EX28DRAFT_0237: EX28DRAFT_0237 - glucokinase, proteobacterial type, at 189,288 to 190,253
_0237
EX28DRAFT_0238: EX28DRAFT_0238 - two component transcriptional regulator, LytTR family, at 190,289 to 191,014
_0238
EX28DRAFT_0239: EX28DRAFT_0239 - Putative regulator of cell autolysis, at 191,018 to 192,724
_0239
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 188.306 kb on + strand, within EX28DRAFT_0236 at 188.306 kb on + strand, within EX28DRAFT_0236 at 188.306 kb on + strand, within EX28DRAFT_0236 at 188.307 kb on - strand, within EX28DRAFT_0236 at 188.327 kb on - strand, within EX28DRAFT_0236 at 188.327 kb on - strand, within EX28DRAFT_0236 at 188.416 kb on + strand, within EX28DRAFT_0236 at 188.702 kb on - strand, within EX28DRAFT_0236 at 188.960 kb on + strand at 189.029 kb on - strand at 189.033 kb on - strand at 189.096 kb on + strand at 189.106 kb on + strand at 189.109 kb on + strand at 189.109 kb on + strand at 189.109 kb on + strand at 189.110 kb on - strand at 189.110 kb on - strand at 189.110 kb on - strand at 189.115 kb on - strand at 189.115 kb on - strand at 189.127 kb on - strand at 189.141 kb on + strand at 189.211 kb on - strand at 189.259 kb on + strand at 189.259 kb on + strand at 189.259 kb on + strand at 189.260 kb on - strand at 189.260 kb on - strand at 189.281 kb on + strand at 189.297 kb on + strand at 189.298 kb on - strand at 189.353 kb on + strand at 189.519 kb on - strand, within EX28DRAFT_0237 at 189.809 kb on - strand, within EX28DRAFT_0237 at 189.809 kb on - strand, within EX28DRAFT_0237 at 189.817 kb on + strand, within EX28DRAFT_0237 at 190.062 kb on + strand, within EX28DRAFT_0237 at 190.063 kb on - strand, within EX28DRAFT_0237 at 190.065 kb on - strand, within EX28DRAFT_0237 at 190.155 kb on + strand, within EX28DRAFT_0237 at 190.155 kb on + strand, within EX28DRAFT_0237 at 190.155 kb on + strand, within EX28DRAFT_0237 at 190.156 kb on - strand, within EX28DRAFT_0237 at 190.374 kb on + strand, within EX28DRAFT_0238 at 190.375 kb on - strand, within EX28DRAFT_0238 at 190.375 kb on - strand, within EX28DRAFT_0238 at 190.416 kb on - strand, within EX28DRAFT_0238 at 190.503 kb on + strand, within EX28DRAFT_0238 at 190.504 kb on - strand, within EX28DRAFT_0238 at 190.557 kb on + strand, within EX28DRAFT_0238 at 190.557 kb on + strand, within EX28DRAFT_0238 at 190.558 kb on - strand, within EX28DRAFT_0238 at 190.608 kb on - strand, within EX28DRAFT_0238 at 190.608 kb on - strand, within EX28DRAFT_0238 at 190.608 kb on - strand, within EX28DRAFT_0238 at 190.720 kb on + strand, within EX28DRAFT_0238 at 190.720 kb on + strand, within EX28DRAFT_0238 at 190.722 kb on + strand, within EX28DRAFT_0238 at 190.786 kb on + strand, within EX28DRAFT_0238 at 190.795 kb on + strand, within EX28DRAFT_0238 at 190.829 kb on + strand, within EX28DRAFT_0238 at 190.856 kb on - strand, within EX28DRAFT_0238 at 190.997 kb on + strand at 190.997 kb on + strand at 190.998 kb on - strand at 190.998 kb on - strand at 191.005 kb on + strand at 191.036 kb on + strand at 191.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 188,306 + EX28DRAFT_0236 0.37 +0.4 188,306 + EX28DRAFT_0236 0.37 +1.5 188,306 + EX28DRAFT_0236 0.37 +1.6 188,307 - EX28DRAFT_0236 0.37 +0.3 188,327 - EX28DRAFT_0236 0.39 +0.6 188,327 - EX28DRAFT_0236 0.39 -3.7 188,416 + EX28DRAFT_0236 0.46 -0.2 188,702 - EX28DRAFT_0236 0.69 -1.8 188,960 + -0.1 189,029 - -0.1 189,033 - -0.4 189,096 + +0.1 189,106 + +0.8 189,109 + +0.5 189,109 + -3.2 189,109 + +0.8 189,110 - +0.7 189,110 - -2.2 189,110 - -2.2 189,115 - -1.3 189,115 - +2.7 189,127 - -1.7 189,141 + -0.6 189,211 - +2.6 189,259 + +0.3 189,259 + +1.9 189,259 + +0.0 189,260 - -0.3 189,260 - +0.7 189,281 + -1.2 189,297 + +1.0 189,298 - +0.0 189,353 + +1.2 189,519 - EX28DRAFT_0237 0.24 -2.4 189,809 - EX28DRAFT_0237 0.54 +0.3 189,809 - EX28DRAFT_0237 0.54 +0.1 189,817 + EX28DRAFT_0237 0.55 -0.1 190,062 + EX28DRAFT_0237 0.80 +1.4 190,063 - EX28DRAFT_0237 0.80 -0.2 190,065 - EX28DRAFT_0237 0.80 +1.4 190,155 + EX28DRAFT_0237 0.90 +1.1 190,155 + EX28DRAFT_0237 0.90 +1.0 190,155 + EX28DRAFT_0237 0.90 -0.3 190,156 - EX28DRAFT_0237 0.90 -0.9 190,374 + EX28DRAFT_0238 0.12 +1.2 190,375 - EX28DRAFT_0238 0.12 -1.4 190,375 - EX28DRAFT_0238 0.12 -0.3 190,416 - EX28DRAFT_0238 0.17 +0.8 190,503 + EX28DRAFT_0238 0.29 -0.0 190,504 - EX28DRAFT_0238 0.30 +1.7 190,557 + EX28DRAFT_0238 0.37 -0.3 190,557 + EX28DRAFT_0238 0.37 +0.5 190,558 - EX28DRAFT_0238 0.37 -1.6 190,608 - EX28DRAFT_0238 0.44 -0.1 190,608 - EX28DRAFT_0238 0.44 +0.0 190,608 - EX28DRAFT_0238 0.44 -0.1 190,720 + EX28DRAFT_0238 0.59 -3.0 190,720 + EX28DRAFT_0238 0.59 +0.2 190,722 + EX28DRAFT_0238 0.60 -1.2 190,786 + EX28DRAFT_0238 0.68 -0.0 190,795 + EX28DRAFT_0238 0.70 +1.2 190,829 + EX28DRAFT_0238 0.74 +0.8 190,856 - EX28DRAFT_0238 0.78 +0.3 190,997 + -0.1 190,997 + -2.2 190,998 - +3.4 190,998 - +1.5 191,005 + -1.0 191,036 + +0.5 191,079 + +0.3
Or see this region's nucleotide sequence