Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0231

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0230 and EX28DRAFT_0231 are separated by 43 nucleotidesEX28DRAFT_0231 and EX28DRAFT_0232 are separated by 348 nucleotides EX28DRAFT_0230: EX28DRAFT_0230 - FOG: EAL domain, at 179,512 to 181,668 _0230 EX28DRAFT_0231: EX28DRAFT_0231 - nucleoside transporter, at 181,712 to 182,899 _0231 EX28DRAFT_0232: EX28DRAFT_0232 - NRAMP (natural resistance-associated macrophage protein) metal ion transporters, at 183,248 to 184,486 _0232 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 180.718 kb on - strand, within EX28DRAFT_0230at 180.954 kb on + strand, within EX28DRAFT_0230at 180.986 kb on + strand, within EX28DRAFT_0230at 181.084 kb on - strand, within EX28DRAFT_0230at 181.084 kb on - strand, within EX28DRAFT_0230at 181.126 kb on - strand, within EX28DRAFT_0230at 181.126 kb on - strand, within EX28DRAFT_0230at 181.126 kb on - strand, within EX28DRAFT_0230at 181.126 kb on - strand, within EX28DRAFT_0230at 181.267 kb on + strand, within EX28DRAFT_0230at 181.385 kb on + strand, within EX28DRAFT_0230at 181.385 kb on + strand, within EX28DRAFT_0230at 181.414 kb on + strand, within EX28DRAFT_0230at 181.414 kb on + strand, within EX28DRAFT_0230at 181.415 kb on - strand, within EX28DRAFT_0230at 181.415 kb on - strand, within EX28DRAFT_0230at 181.449 kb on + strand, within EX28DRAFT_0230at 181.449 kb on + strand, within EX28DRAFT_0230at 181.467 kb on + strandat 181.467 kb on + strandat 181.470 kb on + strandat 181.482 kb on + strandat 181.483 kb on - strandat 181.491 kb on + strandat 181.521 kb on + strandat 181.612 kb on + strandat 181.667 kb on - strandat 181.732 kb on + strandat 181.733 kb on - strandat 181.826 kb on - strandat 181.826 kb on - strandat 181.841 kb on - strand, within EX28DRAFT_0231at 181.982 kb on - strand, within EX28DRAFT_0231at 182.038 kb on - strand, within EX28DRAFT_0231at 182.071 kb on + strand, within EX28DRAFT_0231at 182.176 kb on - strand, within EX28DRAFT_0231at 182.176 kb on - strand, within EX28DRAFT_0231at 182.176 kb on - strand, within EX28DRAFT_0231at 182.322 kb on + strand, within EX28DRAFT_0231at 182.322 kb on + strand, within EX28DRAFT_0231at 182.322 kb on + strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.323 kb on - strand, within EX28DRAFT_0231at 182.344 kb on + strand, within EX28DRAFT_0231at 182.346 kb on + strand, within EX28DRAFT_0231at 182.346 kb on + strand, within EX28DRAFT_0231at 182.346 kb on + strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.347 kb on - strand, within EX28DRAFT_0231at 182.360 kb on - strand, within EX28DRAFT_0231at 182.400 kb on + strand, within EX28DRAFT_0231at 182.401 kb on - strand, within EX28DRAFT_0231at 182.432 kb on - strand, within EX28DRAFT_0231at 182.438 kb on - strand, within EX28DRAFT_0231at 182.438 kb on - strand, within EX28DRAFT_0231at 182.439 kb on + strand, within EX28DRAFT_0231at 182.899 kb on + strandat 182.899 kb on + strandat 182.988 kb on + strandat 183.042 kb on + strandat 183.062 kb on + strandat 183.063 kb on - strandat 183.113 kb on - strandat 183.113 kb on - strandat 183.143 kb on + strandat 183.168 kb on + strandat 183.232 kb on + strandat 183.341 kb on + strandat 183.342 kb on - strandat 183.342 kb on - strandat 183.356 kb on - strandat 183.398 kb on - strand, within EX28DRAFT_0232at 183.398 kb on - strand, within EX28DRAFT_0232at 183.802 kb on + strand, within EX28DRAFT_0232at 183.810 kb on + strand, within EX28DRAFT_0232

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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180,718 - EX28DRAFT_0230 0.56 +0.1
180,954 + EX28DRAFT_0230 0.67 -1.0
180,986 + EX28DRAFT_0230 0.68 +1.0
181,084 - EX28DRAFT_0230 0.73 -0.6
181,084 - EX28DRAFT_0230 0.73 +1.1
181,126 - EX28DRAFT_0230 0.75 +3.0
181,126 - EX28DRAFT_0230 0.75 +0.3
181,126 - EX28DRAFT_0230 0.75 -0.5
181,126 - EX28DRAFT_0230 0.75 +0.2
181,267 + EX28DRAFT_0230 0.81 +1.0
181,385 + EX28DRAFT_0230 0.87 -0.1
181,385 + EX28DRAFT_0230 0.87 +0.1
181,414 + EX28DRAFT_0230 0.88 -2.2
181,414 + EX28DRAFT_0230 0.88 -0.1
181,415 - EX28DRAFT_0230 0.88 -1.4
181,415 - EX28DRAFT_0230 0.88 -0.7
181,449 + EX28DRAFT_0230 0.90 +0.4
181,449 + EX28DRAFT_0230 0.90 +0.1
181,467 + +1.0
181,467 + -1.8
181,470 + +0.9
181,482 + +2.0
181,483 - +0.7
181,491 + +0.8
181,521 + +0.3
181,612 + -2.0
181,667 - +0.4
181,732 + +1.0
181,733 - +0.2
181,826 - +0.9
181,826 - -0.6
181,841 - EX28DRAFT_0231 0.11 +1.0
181,982 - EX28DRAFT_0231 0.23 -1.0
182,038 - EX28DRAFT_0231 0.27 +5.7
182,071 + EX28DRAFT_0231 0.30 -0.1
182,176 - EX28DRAFT_0231 0.39 -0.2
182,176 - EX28DRAFT_0231 0.39 -0.9
182,176 - EX28DRAFT_0231 0.39 -1.5
182,322 + EX28DRAFT_0231 0.51 +0.4
182,322 + EX28DRAFT_0231 0.51 +1.4
182,322 + EX28DRAFT_0231 0.51 -0.7
182,323 - EX28DRAFT_0231 0.51 -0.5
182,323 - EX28DRAFT_0231 0.51 +0.3
182,323 - EX28DRAFT_0231 0.51 +2.1
182,323 - EX28DRAFT_0231 0.51 +0.5
182,323 - EX28DRAFT_0231 0.51 +0.4
182,323 - EX28DRAFT_0231 0.51 +0.3
182,344 + EX28DRAFT_0231 0.53 +0.4
182,346 + EX28DRAFT_0231 0.53 -1.0
182,346 + EX28DRAFT_0231 0.53 +0.0
182,346 + EX28DRAFT_0231 0.53 +0.6
182,347 - EX28DRAFT_0231 0.53 +0.8
182,347 - EX28DRAFT_0231 0.53 -0.8
182,347 - EX28DRAFT_0231 0.53 +0.8
182,347 - EX28DRAFT_0231 0.53 +0.5
182,347 - EX28DRAFT_0231 0.53 -1.5
182,347 - EX28DRAFT_0231 0.53 -0.5
182,360 - EX28DRAFT_0231 0.55 -2.1
182,400 + EX28DRAFT_0231 0.58 +1.4
182,401 - EX28DRAFT_0231 0.58 +1.2
182,432 - EX28DRAFT_0231 0.61 -1.7
182,438 - EX28DRAFT_0231 0.61 -2.4
182,438 - EX28DRAFT_0231 0.61 -1.5
182,439 + EX28DRAFT_0231 0.61 +0.3
182,899 + -3.1
182,899 + +0.4
182,988 + +0.3
183,042 + +0.9
183,062 + +0.8
183,063 - +1.8
183,113 - +0.4
183,113 - -2.4
183,143 + -0.2
183,168 + +0.3
183,232 + -0.5
183,341 + +1.5
183,342 - +1.0
183,342 - -2.0
183,356 - -1.2
183,398 - EX28DRAFT_0232 0.12 -0.1
183,398 - EX28DRAFT_0232 0.12 +1.5
183,802 + EX28DRAFT_0232 0.45 +0.4
183,810 + EX28DRAFT_0232 0.45 -1.3

Or see this region's nucleotide sequence